1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tctttataaaacaaacactgcaagtggcaaaagatatagcctcggatgagacactgacacaacaccaaaatgtgtttgatttaattaaaaaaaacaacagGGGCATTTGCAGCAATGGCAATACTAGGAAAGATGGACCAGACACTGGCATCAAAAGGGATTTCAATGACAATTGCTCCCTTGGGAGCTGTTTGCGCTGT
species | Vitis vinifera |
transcript | Vv17s0000g05620.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAAGAGCTCTGCTGCTCCTTCACTTAGCGACATCCTTTGGCCTTCTGCAG GGGCATTTGCAGCAATGGCAATACTAGGAAAGATGGACCAGACACTGGCATEST: gi|122691927|gb|EC985382.1|EC985382
genomic: GAAGAGCTCTGCTGCTCCTTCACTTAGCGACATCCTTTGGCCTTCTGCTGgtaagacagc ... aaaacaacagGGGCATTTGCAGCAATGGCAATACTAGGAAAGATGGACCAGACACTGGCAT
EST: GAAGAGCTCTGCTGCTCCTTCACTTAGCGACATCCTTTGGCCTTCTGCTG GGGCATTTGCAGCAATGGCAATACTAGGAAAGATGGACCAGACACTGGCATEST: gi|349832518|gb|FQ421079.1|FQ421079
genomic: GAAGAGCTCTGCTGCTCCTTCACTTAGCGACATCCTTTGGCCTTCTGCTGgtaagacagc ... aaaacaacagGGGCATTTGCAGCAATGGCAATACTAGGAAAGATGGACCAGACACTGGCAT
EST: GAAGAGCTCTGCTGCTCCTTCACTTAGCGACATCCTTTGGCCTTCTGCTG GGGCATTTGCAGCAATGGCAATACTAGGAAAGATGGACCAGACACTGGCAT
genomic: GAAGAGCTCTGCTGCTCCTTCACTTAGCGACATCCTTTGGCCTTCTGCTGgtaagacagc ... aaaacaacagGGGCATTTGCAGCAATGGCAATACTAGGAAAGATGGACCAGACACTGGCAT
atgagacactgacacaacaccaaaatgtgtttgatttaattaaaaaaaacaacagGGGCATTTGCAGCAATGGCAATACTAGGAAAGATGGACCAGACACTGGCATCAAAAGGGATTTCAATGACAATTGCTCCCTTGGGAGCTGTTTGCGCTGT
aaaatgtgtttgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctttataaaacaaacactgcaagtggcaaaagatatagcctcggatgagacactgacacaacaccaaaatgtgtttgatttaattaaaaaaaacaacagGGGCATTTGCAGCAATGGCAATACTAGGAAAGATGGACCAGACACTGGCATCAAAAGGGATTTCAATGACAATTGCTCCCTTGGGAGCTGTTTGCGCTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - aaacaaa
- - - - - - - -cactgca
- - - - - - - - - - - - -ggcaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - -ctgacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acaccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aattaaa