1 5' 3' | 2 5' 3' | 3 5' 3' |
...tacaatgttttggtacttgttttccctttttcttttttcctgccttacatcttggtatttgttgatcttgttcttgtttctatgttcctttctgatgtagAGCCACCTGGCTCAGATGTCCACCATAATGGAATATGACCTGGGAGCAGAAGGAGATCTGTTCAAAGCTCCGGAACCCATCATTGAAGAACCAGTCATGG
species | Vitis vinifera |
transcript | Vv16s0098g00360.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCCAGCAGCTTGAGGAGTTTTGTTTTTCACAGAAAACTAATGCTTCAATG AGCCACCTGGCTCAGATGTCCACCATAATGGAATATGACCTGGGAGCAGAAEST: gi|161711549|gb|FC061237.1|FC061237
genomic: TCCAGCAGCTTGAGGAGTTTTGTTTTTCACAGAAAACTAATGCTTCAATGgtaaccattt ... tctgatgtagAGCCACCTGGCTCAGATGTCCACCATAATGGAATATGACCTGGGAGCAGAA
EST: TCCAGCAGCTTGAGGAGTTTTGTTTTTCACAGAAAACTAATGCTTCAATG AGCCACCTGGCTCAGATGTCCACCATAATGGAATATGACCTGGGAGCAGAAEST: gi|71858426|gb|DT007481.1|DT007481
genomic: TCCAGCAGCTTGAGGAGTTTTGTTTTTCACAGAAAACTAATGCTTCAATGgtaaccattt ... tctgatgtagAGCCACCTGGCTCAGATGTCCACCATAATGGAATATGACCTGGGAGCAGAA
EST: TCCAGCAGCTTGAGGAGTTTTGTTTTTCACAGAAAACTAATGCTTCAATG AGCCACCTGGCTCAGATGTCCACCATAATGGAATATGACCTGGGGGCAGAA
genomic: TCCAGCAGCTTGAGGAGTTTTGTTTTTCACAGAAAACTAATGCTTCAATGgtaaccattt ... tctgatgtagAGCCACCTGGCTCAGATGTCCACCATAATGGAATATGACCTGGGAGCAGAA
tacatcttggtatttgttgatcttgttcttgtttctatgttcctttctgatgtagAGCCACCTGGCTCAGATGTCCACCATAATGGAATATGACCTGGGAGCAGAAGGAGATCTGTTCAAAGCTCCGGAACCCATCATTGAAGAACCAGTCATGG
ttctgat putative branch site (score: 3)
tcttgttcttgtttct CT-rich tract
tatttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacaatgttttggtacttgttttccctttttcttttttcctgccttacatcttggtatttgttgatcttgttcttgtttctatgttcctttctgatgtagAGCCACCTGGCTCAGATGTCCACCATAATGGAATATGACCTGGGAGCAGAAGGAGATCTGTTCAAAGCTCCGGAACCCATCATTGAAGAACCAGTCATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- caatgtt
- - - - - - - - - - - -ccctttt
- - - - - - - - - - - - - - - - - - -tcctgcc