1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ggaactcaaatcttcagctaactaatatcatgttatgtaacaatgcccagaaaatagattaatataatgcaatttacttattatcttgtgtttgttccagATTGATATTTATGAAGACAAAGATAATGCAAGGAAGGATGAGATTGCAGCGCTTGGGGGTCAGACAGCAACCGGAACAAACGTGTTTAGTGCATTTTATG
species | Vitis vinifera |
transcript | Vv16s0098g00320.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACAGAGTTCGAAATATGATCGACACCATCACCATTACGACAGAGAAACTC ATTGATATTTATGAAGACAAAGATAATGCAAGGAAGGATGAGATTGCAGCGEST: gi|71858262|gb|DT007317.1|DT007317
genomic: ACAGAGTTCGAAATATGATCGACACCATCACCATTACGACAGAGAAACTCgtaattttct ... tttgttccagATTGATATTTATGAAGACAAAGATAATGCAAGGAAGGATGAGATTGCAGCG
EST: ACAGAGTTCGAAATATGATCGACACCATCACCATTACGACAGAGAAACTC ATTGATATTTATGAAGACAAAGATAATGCAAGGAAGGATGAGATTGCAGCGEST: gi|37189179|gb|CF608528.1|CF608528
genomic: ACAGAGTTCGAAATATGATCGACACCATCACCATTACGACAGAGAAACTCgtaattttct ... tttgttccagATTGATATTTATGAAGACAAAGATAATGCAAGGAAGGATGAGATTGCAGCG
EST: ACAGAGTTCGAAATATGATCGACACCATCACCATTACGACAGAGAAACTC ATTGATATTTATGAAGACAAAGATAATGCAAGGAAGGATGAGATTGCAGCGEST: gi|161715191|gb|FC066437.1|FC066437
genomic: ACAGAGTTCGAAATATGATCGACACCATCACCATTACGACAGAGAAACTCgtaattttct ... tttgttccagATTGATATTTATGAAGACAAAGATAATGCAAGGAAGGATGAGATTGCAGCG
EST: ACAGAGTTCGAAATATGATCGACACCATCACCATTACGACAGAGAAACTC ATTGATATTTATGAAGACAAAGATAATGCAAGGAAGGATGAGATTGCAGCG
genomic: ACAGAGTTCGAAATATGATCGACACCATCACCATTACGACAGAGAAACTCgtaattttct ... tttgttccagATTGATATTTATGAAGACAAAGATAATGCAAGGAAGGATGAGATTGCAGCG
cccagaaaatagattaatataatgcaatttacttattatcttgtgtttgttccagATTGATATTTATGAAGACAAAGATAATGCAAGGAAGGATGAGATTGCAGCGCTTGGGGGTCAGACAGCAACCGGAACAAACGTGTTTAGTGCATTTTATG
gattaat putative branch site (score: 3)
tttgttcc putative PPT
aaaatagattaatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggaactcaaatcttcagctaactaatatcatgttatgtaacaatgcccagaaaatagattaatataatgcaatttacttattatcttgtgtttgttccagATTGATATTTATGAAGACAAAGATAATGCAAGGAAGGATGAGATTGCAGCGCTTGGGGGTCAGACAGCAACCGGAACAAACGTGTTTAGTGCATTTTATG
-gaactca
- - - - - - ttcagct
- - - - - - - - - -aactaat
- - - - - - - - - - - - - -tcatgtt
- - - - - - - - - - - - - - - - - - - - caatgcc
- - - - - - - - - - - - - - - - - - - - - - - - agaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgcaa