Sequence
atgc intronic sequence ATGC exonic sequence...gtatcaaggaaggtaggataaccattcaagcacaatattcatttttgaattctacaactgatcattacaaatctgggtagtttttcttgtgttcaaacagATGGGGGTCCCTGCTAACGTGCCCACTGCTTTACCGGAAACCAAAGTGATTCAAGGAGTATCATTTGTGCCAATGCCAAGTTTCTCAGGCTCCAATTTTC
Basic information
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122691962|gb|EC985862.1|EC985862EST: TGGAAGCTCCTCCCATTTTACCCATGGCTGCTTGTGGTGTTCCCTACATG ATGGGGGTCCCTGCTAACGTGCCCACTGCTTTACCGGAAACTAAAGTGATT
genomic: TGGAAGCTCATCCCATTTTACCCATGGCTGCTTGTGGTGTTCCCTACATGgtaagaagga ... gttcaaacagATGGGGGTCCCTGCTAACGTGCCCACTGCTTTACCGGAAACCAAAGTGATT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgaattctacaactgatcattacaaatctgggtagtttttcttgtgttcaaacagATGGGGGTCCCTGCTAACGTGCCCACTGCTTTACCGGAAACCAAAGTGATTCAAGGAGTATCATTTGTGCCAATGCCAAGTTTCTCAGGCTCCAATTTTC
aactgat putative branch site (score: 3)
tttttcttgtgttc putative PPT
attacaaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatcaaggaaggtaggataaccattcaagcacaatattcatttttgaattctacaactgatcattacaaatctgggtagtttttcttgtgttcaaacagATGGGGGTCCCTGCTAACGTGCCCACTGCTTTACCGGAAACCAAAGTGATTCAAGGAGTATCATTTGTGCCAATGCCAAGTTTCTCAGGCTCCAATTTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - caaggaa
- - - - - - - aggataa
- - - - - - - - - - -ccattca
- - - - - - - - - - - - - - - cacaata
- - - - - - - - - - - - - - - - - - - - - - - - - -ctacaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acaaatc