Sequence
atgc intronic sequence ATGC exonic sequence...ccttgttttaatatattgctttttaaccatcaaaaaatgctttctttcaatgccataaattattacaactacttgaagtatatgtctatctcctttgcagATCTGGCACAGCAACATGCCACACAATAAAATTGCTGACAGGAAAGGTCACCAGGGATGGATGAAAGAAGAAGGCATGTACTTCATTTTCCCTGGGGGTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0048g01990.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA18G45990.1 (Glycine max), 3'ss of exon 1
ccttgttttaatatattgc-tttttaaccatcaaaaaatgctttctttcaatgccataaattattacaactacttgaagtatatgtc-tatctcctttgcagATCTGGCACAGCAACATGCCACACAATAAAATTGCTGACAGGAAAGGTCACCAGGGATGGATGAAAGAAGAAGGCATGTACTTCATTTTCCCTGGGGGTG-
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-aagaatacaagatatcatgtactctagtttagaatgccgctgggatttatcac--tcatttgattcatccatccaaaacattgatggtatattctgtgcagaTATGGCACAGCAACATGCCATACAACAAGATTGCTGACAGGAAAGGTCACCAGGGATGGATGAAACTAGAAGGTCAACACTTTATATTCCCTGGTGGTGG
upper sequence: Vv15s0048g01990.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA09G40110.2 (Glycine max), 3'ss of exon 1
---ccttgttttaatatattgctttttaaccatcaaaaaatgctttctttcaatgccataaattattacaactacttgaagtatatgtc-tatctcctttgcagATCTGGCACAGCAACATGCCACACAATAAAATTGCTGACAGGAAAGGTCACCAGGGATGGATGAAAGAAGAAGGCATGTACTTCATTTTCCCTGGGGGTG
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gaacatcatcaagatatcatatactctaatt-tagaatgatgttgggattta---tcactcattgattcatccatccaaaatattgataatatattatgtgcagATATGGCACAGCAACATGCCGTACAACAAGATTGCTGACAGGAAAGGTCACCAGGGATGGATGAAACTAGAAGGTCAACACTTTATATTCCCTGGTGGTG
upper sequence: Vv15s0048g01990.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA03G01870.1 (Glycine max), 3'ss of exon 1
----ccttgttttaatatattgctttttaaccatcaaaaaatgctttctttcaatgccataaattattacaactacttgaagtatatgtctatctcctttgcagATCTGGCACAGCAACATGCCACACAATAAAATTGCTGACAGGAAAGGTCACCAGGGATGGATGAAAGAAGAAGGCATGTACTTCATTTTCCCTGGGGGTG
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gcaattatgtgtctcagaaaaaatatttaccttttagaatgttgttgatgtt--tgccatttagtgatctatctatctaaaa-gcactgatgtattcat-gtagATATGGCACAGCAACATGCCATACAACAAGATTGCTGACAGGAAAGGTCACCAAGGATGGATGAAGCTTGAAGGTCCTCACTTTATATTCCCTGGAGGTG
upper sequence: Vv15s0048g01990.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA07G08360.1 (Glycine max), 3'ss of exon 1
-ccttgttttaatatattgctttttaaccatcaaaaaatgctttctt--tcaatgccataaattattacaactacttgaagtatatgtctatctcctttgcagATCTGGCACAGCAACATGCCACACAATAAAATTGCTGACAGGAAAGGTCACCAGGGATGGATGAAAGAAGAAGGCATGTACTTCATTTTCCCTGGGGGTG
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attatgtgtcagaaaaatg-tttttaatttttagaatgttgttgattgatgtttgttatttagtgatctatctatctaaaa-gcactgatgtattcat-gtagATATGGCACAGCAACATGCCATACAACAAGATTGCTGACAGGAAAGGTCACCAAGGATGGATGAAGCTTGATGGTCCTCACTTTATATTCCCTGGAGGTG
upper sequence: Vv15s0048g01990.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT4G00740.1 (Arabidopsis thaliana), 3'ss of exon 1
---------------------------------------------------------------ccttgttttaatatattgctttttaaccatcaaaaaatgctttctttcaatgccataaattattacaactacttgaagtatatgtctatctcctttgcagATCTGGCACAGCAACATGCCACACAATAAAATTGCTGACAGGAAAGGTCACCAGGGATGGATGAAAGAAGAAGGCATGTACTTCATTTTCCCTGGGGGTG
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gtatattggattctagctcctattaccatggttttgtagattatatagttcaggatagctattagctagttcgatttattggtgat-gtctagttttgcatggttagaaacatgtctcttggtgtttgttagactgttaaagatggctgtttgaactttgtagATTTGGCATGCAAACATGCCATATAACAAAATTGCTGACCGGAAAGGTCATCAAGGATGGATGAAAAGGGAAGGGGAATACTTTACTTTCCCAGGCGGTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32249709|gb|CD715528.1|CD715528EST: CGCCTGATGGGTACCATATTCCTGTTCGGTGGCCGGACAGCTTGCATAAG ATCTGGCACAGCAACATGCCACACAATAAAATTGCTGACAGGAAAGGTCAC
genomic: CGCCTGATGGGTACCATATTCCTGTTCGGTGGCCGGACAGCTTGCATAAGgtctgtgtat ... tcctttgcagATCTGGCACAGCAACATGCCACACAATAAAATTGCTGACAGGAAAGGTCAC
EST:
gi|110365443|gb|EC928440.1|EC928440EST: CGCCTGATGGGTACCATATTCCTGTTCGGTGGCCGGACAGCTTGCATAAG ATCTGGCACAGCAACATGCCACACAATAAAATTGCTGACAGGAAAGGTCAC
genomic: CGCCTGATGGGTACCATATTCCTGTTCGGTGGCCGGACAGCTTGCATAAGgtctgtgtat ... tcctttgcagATCTGGCACAGCAACATGCCACACAATAAAATTGCTGACAGGAAAGGTCAC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttcaatgccataaattattacaactacttgaagtatatgtctatctcctttgcagATCTGGCACAGCAACATGCCACACAATAAAATTGCTGACAGGAAAGGTCACCAGGGATGGATGAAAGAAGAAGGCATGTACTTCATTTTCCCTGGGGGTG
tgtctatctccttt CT-rich tract
ataaattattacaact TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ccttgttttaatatattgctttttaaccatcaaaaaatgctttctttcaatgccataaattattacaactacttgaagtatatgtctatctcctttgcagATCTGGCACAGCAACATGCCACACAATAAAATTGCTGACAGGAAAGGTCACCAGGGATGGATGAAAGAAGAAGGCATGTACTTCATTTTCCCTGGGGGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - aaccatc
- - - - - - - - - - - - - - - -aaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - ccataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caactac