1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gttgaatttttttgataagaggatatttggataccaaattggttgagtttgggtgtaaaagtttaatggttggttatctcacagttttaattatgagcagGCAGTTGATGCAGCTGTCAGGATCTTGAAGGAAGGCACAATGGATGCCATTAAATTGGAAGGAGGATCACCTTCAAGAATTACAGCAGCAAAATCCATTG
species | Vitis vinifera |
transcript | Vv15s0046g02170.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTCTCGTCGGTGATCTTCCATTTGGGACATATGAGTCTAGTTCAAATCAG GCAGTTGATGCAGCTGTCAGGATCTTGAAGGAAGGCACAATGGATGCCATTEST: gi|161721157|gb|FC070393.1|FC070393
genomic: TTCTCGTCGGTGATCTTCCATTTGGGACATATGAGTCTAGTTCAAATCAGgtattgatga ... ttatgagcagGCAGTTGATGCAGCTGTCAGGATCTTGAAGGAAGGCACAATGGATGCCATT
EST: TTCTCGTCGGTGATCTTCCATTTGGGACATATGAGTCTAGTTCAAATCAG GCAGTTGATGCAGCTGTCAGGATCTTGAAGGAAGGCACAATGGATGCCATTEST: gi|110685873|gb|EE062975.1|EE062975
genomic: TTCTCGTCGGTGATCTTCCATTTGGGACATATGAGTCTAGTTCAAATCAGgtattgatga ... ttatgagcagGCAGTTGATGCAGCTGTCAGGATCTTGAAGGAAGGCACAATGGATGCCATT
EST: TTCTCGTCGGTGATCTTCCATTTGGGACATATGAGTCTAGTTCAAATCAG GCAGTTGATGCAGCTGTCAGGATCTTGAAGGAAGGCACAATGGATGCCATTEST: gi|110685865|gb|EE062960.1|EE062960
genomic: TTCTCGTCGGTGATCTTCCATTTGGGACATATGAGTCTAGTTCAAATCAGgtattgatga ... ttatgagcagGCAGTTGATGCAGCTGTCAGGATCTTGAAGGAAGGCACAATGGATGCCATT
EST: TTCTCGTCGGTGATCTTCCATTTGGGACATATGAGTCTAGTTCAAATCAG GCAGTTGATGCAGCTGTCAGGATCTTGAAGGAAGGCACAATGGATGCCATTEST: gi|110684865|gb|EE062628.1|EE062628
genomic: TTCTCGTCGGTGATCTTCCATTTGGGACATATGAGTCTAGTTCAAATCAGgtattgatga ... ttatgagcagGCAGTTGATGCAGCTGTCAGGATCTTGAAGGAAGGCACAATGGATGCCATT
EST: TTCTCGTCGGTGATCTTCCATTTGGGACATATGAGTCTAGTTCAAATCAG GCAGTTGATGCAGCTGTCAGGATCTTGAAGGAAGGCACAATGGATGCCATTEST: gi|110732392|gb|EE107638.1|EE107638
genomic: TTCTCGTCGGTGATCTTCCATTTGGGACATATGAGTCTAGTTCAAATCAGgtattgatga ... ttatgagcagGCAGTTGATGCAGCTGTCAGGATCTTGAAGGAAGGCACAATGGATGCCATT
EST: TTCTCGTCGGTGATCTTCCATTTGGGACATATGAGTCTAGTTCAAATCAG GCAGTTGATGCAGCTGTCAGGATCTTGAAGGAAGGCACAATGGATGCCATTEST: gi|37190616|gb|CF609965.1|CF609965
genomic: TTCTCGTCGGTGATCTTCCATTTGGGACATATGAGTCTAGTTCAAATCAGgtattgatga ... ttatgagcagGCAGTTGATGCAGCTGTCAGGATCTTGAAGGAAGGCACAATGGATGCCATT
EST: TTCTCGTCGGTGATCTTCCATTTGGGACATATGAGTCTAGTTCAAATCAG GCAGTTGATGCAGCTGTCAGGATCTTGAAGGAAGGCACAATGGATGCCATTEST: gi|110685210|gb|EE063373.1|EE063373
genomic: TTCTCGTCGGTGATCTTCCATTTGGGACATATGAGTCTAGTTCAAATCAGgtattgatga ... ttatgagcagGCAGTTGATGCAGCTGTCAGGATCTTGAAGGAAGGCACAATGGATGCCATT
EST: TTCTCGTCGGTGATCTTCCATTTGGGACATATGAGTCTAGTTCAAATCAG GCAGTTGATGCAGCTGTCAGGATCTTGAAGGAAGGCACAATGGATGCCATTEST: gi|110711460|gb|EE087965.1|EE087965
genomic: TTCTCGTCGGTGATCTTCCATTTGGGACATATGAGTCTAGTTCAAATCAGgtattgatga ... ttatgagcagGCAGTTGATGCAGCTGTCAGGATCTTGAAGGAAGGCACAATGGATGCCATT
EST: TTCTCGTCGGTGATCTTCCATTTGGGACATATGAGTCTAGTTCAAATCAG GCAGTTGATGCAGCTGTCAGGATCTTGAAGGAAGGCACAATGGATGCCATTEST: gi|37185300|gb|CF604653.1|CF604653
genomic: TTCTCGTCGGTGATCTTCCATTTGGGACATATGAGTCTAGTTCAAATCAGgtattgatga ... ttatgagcagGCAGTTGATGCAGCTGTCAGGATCTTGAAGGAAGGCACAATGGATGCCATT
EST: TTCTCGTCGGTGATCTTCCATTTGGGACATATGAGTCTAGTTCAAATCAG GCAGTTGATGCAGCTGTCAGGATEST: gi|71875196|gb|DT024251.1|DT024251
genomic: TTCTCGTCGGTGATCTTCCATTTGGGACATATGAGTCTAGTTCAAATCAGgtattgatga ... ttatgagcagGCAGTTGATGCAGCTGTCAGGAT
EST: TTCTCGTCGGTGATCTTCCATTTGGGACATATGAGTCTAGTTCAAATCAG GCAGTTGATGCAGCTGTCAGGATCTTGAAGGAAGGCACAATGGATGCCATTEST: gi|37185305|gb|CF604658.1|CF604658
genomic: TTCTCGTCGGTGATCTTCCATTTGGGACATATGAGTCTAGTTCAAATCAGgtattgatga ... ttatgagcagGCAGTTGATGCAGCTGTCAGGATCTTGAAGGAAGGCACAATGGATGCCATT
EST: TTCTCGTCGGTGATCTTCCATTTGGGACATATGAGTCTAGTTCAAATCAG GCAGTTGATGCAGCTGTCAGGATCTTGAAGGAAGGCACAATGGATGCCATT
genomic: TTCTCGTCGGTGATCTTCCATTTGGGACATATGAGTCTAGTTCAAATCAGgtattgatga ... ttatgagcagGCAGTTGATGCAGCTGTCAGGATCTTGAAGGAAGGCACAATGGATGCCATT
agtttgggtgtaaaagtttaatggttggttatctcacagttttaattatgagcagGCAGTTGATGCAGCTGTCAGGATCTTGAAGGAAGGCACAATGGATGCCATTAAATTGGAAGGAGGATCACCTTCAAGAATTACAGCAGCAAAATCCATTG
ttttaat putative branch site (score: 3)
tgtaaaagtttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgaatttttttgataagaggatatttggataccaaattggttgagtttgggtgtaaaagtttaatggttggttatctcacagttttaattatgagcagGCAGTTGATGCAGCTGTCAGGATCTTGAAGGAAGGCACAATGGATGCCATTAAATTGGAAGGAGGATCACCTTCAAGAATTACAGCAGCAAAATCCATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - aagagga
- - - - - - - - - - - - - - - ataccaa
- - - - - - - - - - - - - - - - - - - -tggttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - gtaaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggttgg