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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctcttgtttcttctacttgtattttgttatggcttttcttgtgtctgcgtctgcgtgcgtagttaattcttcacacttaattgttgctttttccatgctaaagcagGGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTATATCTTCGTATTCAG

Basic information

species Vitis vinifera
transcript Vv14s0068g01300.t01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352778118|gb|FQ467171.1|FQ467171
EST:     GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAG                         GGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
genomic: GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAGgtctcttgtt ... gctaaagcagGGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
EST: gi|349823630|gb|FQ415040.1|FQ415040
EST:     GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAG                         GGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
genomic: GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAGgtctcttgtt ... gctaaagcagGGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
EST: gi|349832894|gb|FQ423016.1|FQ423016
EST:     GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAG                         GGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
genomic: GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAGgtctcttgtt ... gctaaagcagGGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
EST: gi|351033557|gb|FQ447716.1|FQ447716
EST:     GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAG                         GGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
genomic: GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAGgtctcttgtt ... gctaaagcagGGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
EST: gi|351041981|gb|FQ456191.1|FQ456191
EST:     GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAG                         GGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
genomic: GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAGgtctcttgtt ... gctaaagcagGGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
EST: gi|351054108|gb|FQ450190.1|FQ450190
EST:     GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAG                         GGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
genomic: GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAGgtctcttgtt ... gctaaagcagGGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
EST: gi|352773004|gb|FQ470619.1|FQ470619
EST:     GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAG                         GGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
genomic: GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAGgtctcttgtt ... gctaaagcagGGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
EST: gi|351046320|gb|FQ448625.1|FQ448625
EST:     GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAG                         GGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
genomic: GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAGgtctcttgtt ... gctaaagcagGGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
EST: gi|351054020|gb|FQ441786.1|FQ441786
EST:     GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAG                         GGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
genomic: GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAGgtctcttgtt ... gctaaagcagGGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
EST: gi|349808540|gb|FQ405684.1|FQ405684
EST:     GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAG                         GGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
genomic: GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAGgtctcttgtt ... gctaaagcagGGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
EST: gi|349807664|gb|FQ402055.1|FQ402055
EST:     GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAG                         GGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACACCTA
genomic: GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAGgtctcttgtt ... gctaaagcagGGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
EST: gi|349820492|gb|FQ408442.1|FQ408442
EST:     GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAG                         GGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
genomic: GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAGgtctcttgtt ... gctaaagcagGGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
EST: gi|349822627|gb|FQ412891.1|FQ412891
EST:     GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAG                         GGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCAA
genomic: GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAGgtctcttgtt ... gctaaagcagGGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
EST: gi|351015401|gb|FQ447230.1|FQ447230
EST:     GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAG                         GGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
genomic: GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAGgtctcttgtt ... gctaaagcagGGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
EST: gi|349819861|gb|FQ404535.1|FQ404535
EST:     GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAG                         GGGTACGCCCCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
genomic: GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAGgtctcttgtt ... gctaaagcagGGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
EST: gi|349819166|gb|FQ412060.1|FQ412060
EST:     GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAG                         GGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
genomic: GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAGgtctcttgtt ... gctaaagcagGGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
EST: gi|349820920|gb|FQ408628.1|FQ408628
EST:     GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAG                         GGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
genomic: GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAGgtctcttgtt ... gctaaagcagGGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
EST: gi|351056259|gb|FQ453721.1|FQ453721
EST:     GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAG                         GGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
genomic: GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAGgtctcttgtt ... gctaaagcagGGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
EST: gi|352782149|gb|FQ470051.1|FQ470051
EST:     GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAG                         GGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
genomic: GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAGgtctcttgtt ... gctaaagcagGGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
EST: gi|351037559|gb|FQ462542.1|FQ462542
EST:     GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAG                         GGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
genomic: GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAGgtctcttgtt ... gctaaagcagGGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
EST: gi|349813001|gb|FQ411241.1|FQ411241
EST:     GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAG                         GGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
genomic: GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAGgtctcttgtt ... gctaaagcagGGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
EST: gi|351021667|gb|FQ437052.1|FQ437052
EST:     GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAG                         GGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
genomic: GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAGgtctcttgtt ... gctaaagcagGGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
EST: gi|349822644|gb|FQ412908.1|FQ412908
EST:     GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAG                         GGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
genomic: GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAGgtctcttgtt ... gctaaagcagGGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
EST: gi|352789617|gb|FQ476215.1|FQ476215
EST:     GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAG                         GGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
genomic: GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAGgtctcttgtt ... gctaaagcagGGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
EST: gi|351032559|gb|FQ458924.1|FQ458924
EST:     GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAG                         GGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
genomic: GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAGgtctcttgtt ... gctaaagcagGGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
EST: gi|352772806|gb|FQ473844.1|FQ473844
EST:     GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAG                         GGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
genomic: GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAGgtctcttgtt ... gctaaagcagGGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
EST: gi|349808891|gb|FQ406741.1|FQ406741
EST:     GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAG                         GGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
genomic: GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAGgtctcttgtt ... gctaaagcagGGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
EST: gi|351032958|gb|FQ461847.1|FQ461847
EST:     GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAG                         GGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
genomic: GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAGgtctcttgtt ... gctaaagcagGGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
EST: gi|349823382|gb|FQ402581.1|FQ402581
EST:     GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAG                         GGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
genomic: GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAGgtctcttgtt ... gctaaagcagGGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
EST: gi|349826514|gb|FQ418605.1|FQ418605
EST:     GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAG                         GGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
genomic: GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAGgtctcttgtt ... gctaaagcagGGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
EST: gi|349810608|gb|FQ402851.1|FQ402851
EST:     GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAG                         GGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
genomic: GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAGgtctcttgtt ... gctaaagcagGGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
EST: gi|349817896|gb|FQ407885.1|FQ407885
EST:     GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAG                         GGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
genomic: GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAGgtctcttgtt ... gctaaagcagGGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
EST: gi|351057058|gb|FQ448575.1|FQ448575
EST:     GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAG                         GGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
genomic: GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAGgtctcttgtt ... gctaaagcagGGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcgtgcgtagttaattcttcacacttaattgttgctttttccatgctaaagcagGGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTATATCTTCGTATTCAG
                                            tgctaaa  putative branch site (score: 2)
        tagttaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtctcttgtttcttctacttgtattttgttatggcttttcttgtgtctgcgtctgcgtgcgtagttaattcttcacacttaattgttgctttttccatgctaaagcagGGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTATATCTTCGTATTCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA