1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...aatttgatgtgcattctcttgtattactataattgtgcctatttatgtatgccaaaatttctctataaacttttgatatttcttttcttgtattctatagGTTCTCATCTGAAGATGTATCCTCACAAAATCAAGTTAAGGCATCGGTGCAACGCAAAATTCGGCAAAGCATTGCAGATGAG
species | Vitis vinifera |
transcript | Vv14s0060g01920.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTGAAGATACTCACATTTTCTCTCCATTCACCTCTCAAAATGTTCAAAAA GTTCTCATCTGAAGATGTATCCTCACAAAATCAAGTTAAGGCATCGGTGCAEST: gi|110697600|gb|EE074740.1|EE074740
genomic: TTGAAGATACTCACATTTTCTCTCCATTCACCTCTCAAAATGTTCAAAAAgtaagcgcgc ... tattctatagGTTCTCATCTGAAGATGTATCCTCACAAAATCAAGTTAAGGCATCGGTGCA
EST: CAAAATGTTCAAAAA GTTCTCATCTGAAGATGTATCCTCACAAAATCAAGTTAAGGCATCGGTGCAEST: gi|110722653|gb|EE099067.1|EE099067
genomic: CAAAATGTTCAAAAAgtaagcgcgc ... tattctatagGTTCTCATCTGAAGATGTATCCTCACAAAATCAAGTTAAGGCATCGGTGCA
EST: TTGAAGATACTCACATTTTCTCTCCATTCACCTCTCAAAATGTTCAAAAA GTTCTCATCTGAAGATGTATCCTCACAAAATCAAGTTAAGGCATCGGTGCAEST: gi|110690622|gb|EE067882.1|EE067882
genomic: TTGAAGATACTCACATTTTCTCTCCATTCACCTCTCAAAATGTTCAAAAAgtaagcgcgc ... tattctatagGTTCTCATCTGAAGATGTATCCTCACAAAATCAAGTTAAGGCATCGGTGCA
EST: TTGAAGATACTCACATTTTCTCTCCATTCACCTCTCAAAATGTTCAAAAA GTTCTCATCTGAAGATGTATCCTCACAAAATCAAGTTAAGGCATCGGTGCAEST: gi|110387074|gb|EC951714.1|EC951714
genomic: TTGAAGATACTCACATTTTCTCTCCATTCACCTCTCAAAATGTTCAAAAAgtaagcgcgc ... tattctatagGTTCTCATCTGAAGATGTATCCTCACAAAATCAAGTTAAGGCATCGGTGCA
EST: TTGAAGATACTCACATTTTCTCTCCATTCACCTCTCAAAATGTTCAAAAA GTTCTCATCTGAAGATGTATCCTCACAAAATCAAGTTAAGGCATCGGTGCA
genomic: TTGAAGATACTCACATTTTCTCTCCATTCACCTCTCAAAATGTTCAAAAAgtaagcgcgc ... tattctatagGTTCTCATCTGAAGATGTATCCTCACAAAATCAAGTTAAGGCATCGGTGCA
tgtatgccaaaatttctctataaacttttgatatttcttttcttgtattctatagGTTCTCATCTGAAGATGTATCCTCACAAAATCAAGTTAAGGCATCGGTGCAACGCAAAATTCGGCAAAGCATTGCAGATGAG
ttttgat putative branch site (score: 4)
tttcttttcttgtatt CT-rich tract
aaaatttctctataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatttgatgtgcattctcttgtattactataattgtgcctatttatgtatgccaaaatttctctataaacttttgatatttcttttcttgtattctatagGTTCTCATCTGAAGATGTATCCTCACAAAATCAAGTTAAGGCATCGGTGCAACGCAAAATTCGGCAAAGCATTGCAGATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - gcattct
- - - - - - - - - - - - - - - - - -tgcctat
- - - - - - - - - - - - - - - - - - - - - - - - - -ccaaaat