Sequence
atgc intronic sequence ATGC exonic sequencegtaccaaataatatcatcatgatcatcaggtcctgaaattttttgtcatatcacgttctctcgcacatctgattttctgcttttgtttctgcagGTTTACCAGCTCTCCATTGGAGCTGCATGTGGCCTTTCATGGCCTTCTGAAAGAATCATAATTCAAGTTCTGGACGATTCCACCGACCCAACCATTAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0074g00500.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA10G34550.1 (Glycine max), 3'ss of exon 3
---------------------------------------------------gtaccaaataatatcatcatgat---catcaggtcctgaaattttttgtcatatcac-gttctctcgcacatct---gattttctgcttttgtttctgcagGTTTACCAGCTCTCCATTGGAGCTGCATGTGGCCTTTCATGGCCTTCTGAAAGAATCATAATTCAAGTTCTGGACGATTCCACCGACCCAACCATTAAG
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gtattactattactatagagttatcccattcaataaaagtcttttctttatctataaaggaaaactgttatgacatggattgttttcttgaattttttattttttttttactgaagtgaaagtttttgagagtactgtttcattggttgcagGTGTATCAATTATCAATTGGAGCTGCATGTGGGCTATCATGGCCATCTGATAGGATTATTATTCAAGTTCTTGATGATTCCACTGACCCAATCATTAAG
upper sequence: Vv13s0074g00500.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA20G32990.1 (Glycine max), 3'ss of exon 1
--------------------------------------------------gtaccaaataatatcatcatgatcatcaggtcctgaaattttttgtcatatcacgttctctcgcacatctgattttctgctt-ttgtttc------tgcagGTTTACCAGCTCTCCATTGGAGCTGCATGTGGCCTTTCATGGCCTTCTGAAAGAATCATAATTCAAGTTCTGGACGATTCCACCGACCCAACCATTAAG
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gtaggtattactagagttatttcctttaataaacctcttttttttattcaaaagaaaaaattgttatgacatggattgtttcttgaaatagtttttttttttttttttactgaagttaaagtttttgtgggtactgtttcattggttgcagGTGTATCAATTGTCAATTGGAGCTGCATGTGGGCTATCATGGCCATCTGATAGGGTTATTATTCAAGTTCTTGATGATTCCACTGACCCAATCATTAAG
upper sequence: Vv13s0074g00500.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: EFJ35401 (Selaginella moellendorffii), 3'ss of exon 1
gtaccaaataatatcatc-atgatcatcaggtcctgaaattttttgtcatatcacgttctctcgcacatctgattttctgcttttgtttctgc----agGTTTACCAGCTCTCCATTGGAGCTGCATGTGGCCTTTCATGGCCTTCTGAAAGAATCATAATTCAAGTTCTGGACGATTCCACCGACCCAACCATTAAG
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-------gtgatctattcgatgcctagcccaccct----ctcgctgtggc-taacgaagtttagc----ttggttttttggtctggattctcctcccagGTGTACCAGCTCTCAATTGGCGCTGCTTGTGGCCTCTCGTGGCCTTCGGACCGCATTATTGTGCAAATCCTGGACGATTCGACCGACCTCACCATCAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|156737268|gb|EV241389.1|EV241389EST: CAGCTTACCCAATGGTTCTTGTGCAAATCCCAATGTACAATGAAAAAGAG GTTTACCAGCTCTCCATTGGAGCTGCATGTGGCCTTTCATGGCCTTCTGAA
genomic: CAGCTTACCCAATGGTTCTTGTGCAAATCCCAATGTACAATGAAAAAGAGgtaccaaata ... gtttctgcagGTTTACCAGCTCTCCATTGGAGCTGCATGTGGCCTTTCATGGCCTTCTGAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttttgtcatatcacgttctctcgcacatctgattttctgcttttgtttctgcagGTTTACCAGCTCTCCATTGGAGCTGCATGTGGCCTTTCATGGCCTTCTGAAAGAATCATAATTCAAGTTCTGGACGATTCCACCGACCCAACCATTAAG
atctgat putative branch site (score: 4)
ttttctgcttttgttt CT-rich tract
ttttgttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaccaaataatatcatcatgatcatcaggtcctgaaattttttgtcatatcacgttctctcgcacatctgattttctgcttttgtttctgcagGTTTACCAGCTCTCCATTGGAGCTGCATGTGGCCTTTCATGGCCTTCTGAAAGAATCATAATTCAAGTTCTGGACGATTCCACCGACCCAACCATTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA