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...tatgttgatttgcaattttgcttaggactggtaatctgtttgatcactgtactgttattatgacaattctatagctgaatcctataatttatttgtgcagAAAATTTTCTTGGATAGCATTGTGGAAAATGATATTAAGAGTTTGTGTGCAAATATATTGAAGTCATCAGGAAGGGCTCCCAAAAACAGTGATGAG
species | Vitis vinifera |
transcript | Vv13s0067g03060.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAAAGCAAAGCATAGTGTCTTCTCTCTGCAAGCACCTCTCCTTGGATCCT AAAATTTTCTTGGATAGCATTGTGGAAAATGATATTAAGAGTTTGTGTGCAEST: gi|161715790|gb|FC067412.1|FC067412
genomic: GAAAGCAAAGCATAGTGTCTTCTCTCTGCAAGCACCTCTCCTTGGATCCTgtaagtttct ... atttgtgcagAAAATTTTCTTGGATAGCATTGTGGAAAATGATATTAAGAGTTTGTGTGCA
EST: GAAAGCAAAGCATAGTGTCTTCTCTCTGCAAGCACCTCTCCTTGGATCCT AAAATTTTCTTGGATAGCATTGTGGAAAATGATATTAAGAGTTTGTGTGCAEST: gi|161708273|gb|FC057458.1|FC057458
genomic: GAAAGCAAAGCATAGTGTCTTCTCTCTGCAAGCACCTCTCCTTGGATCCTgtaagtttct ... atttgtgcagAAAATTTTCTTGGATAGCATTGTGGAAAATGATATTAAGAGTTTGTGTGCA
EST: GAAAGCAAAGCATAGTGTCTTCTCTCTGCAAGCACCTCTCCTTGGATCCT AAAATTTTCTTGGATAGCATTGTGGAAAATGATATTAAGAGTTTGTGTGCA
genomic: GAAAGCAAAGCATAGTGTCTTCTCTCTGCAAGCACCTCTCCTTGGATCCTgtaagtttct ... atttgtgcagAAAATTTTCTTGGATAGCATTGTGGAAAATGATATTAAGAGTTTGTGTGCA
actgtactgttattatgacaattctatagctgaatcctataatttatttgtgcagAAAATTTTCTTGGATAGCATTGTGGAAAATGATATTAAGAGTTTGTGTGCAAATATATTGAAGTCATCAGGAAGGGCTCCCAAAAACAGTGATGAG
tttattt CT-rich tract
aatcctataatttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatgttgatttgcaattttgcttaggactggtaatctgtttgatcactgtactgttattatgacaattctatagctgaatcctataatttatttgtgcagAAAATTTTCTTGGATAGCATTGTGGAAAATGATATTAAGAGTTTGTGTGCAAATATATTGAAGTCATCAGGAAGGGCTCCCAAAAACAGTGATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - ggactgg
- - - - - - - - - - - - - - - - - -ctgtttg
- - - - - - - - - - - - - - - - - - - - - - cactgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgaatcc