Sequence
atgc intronic sequence ATGC exonic sequence...ggtattatcctattacttactgtaagggatatgtgactttaagaggaactgttgtgcacatttttcgaacggatgacataaacctttccttgtgcaacagGATGAGGTATTATACGAAGTCAATGCAAATTCTGAGAATTGGATGATTGTCGAGAGAAAGAGAGGCCATGTATCACTCTCAACAAAGCAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0019g01570.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT5G54440.1 (Arabidopsis thaliana), 3'ss of exon 19
---------ggtattatcctattacttactgtaagggatatgtgact-ttaagaggaactgttgtgcacatttttcgaacggatgacataaacct----ttccttgtgcaacagGATGAGGTATTATACGAAGTCAATGCAAATTCTGAGAATTGGATGATTGTCGAGAGAAAGAGAGGCCATGTATCACTCTCAACAAAGCAAG
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gtaagtgatgtccatatcgagctactcgatatagcttcttcctatctattgaaactatatattactttaaaatatcggcatgttcatcaaaatttgttgttttatttacacaagGATGAGGTGTTATATGAAGTCAATGCAAATTCGGAGAATTGGATGATCGCTGGTAGGAAGAGAGGCCATGTCTCTCTCTCAGAGGAGCAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gaactgttgtgcacatttttcgaacggatgacataaacctttccttgtgcaacagGATGAGGTATTATACGAAGTCAATGCAAATTCTGAGAATTGGATGATTGTCGAGAGAAAGAGAGGCCATGTATCACTCTCAACAAAGCAAG
cctttccttgt CT-rich tract
acattttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ggtattatcctattacttactgtaagggatatgtgactttaagaggaactgttgtgcacatttttcgaacggatgacataaacctttccttgtgcaacagGATGAGGTATTATACGAAGTCAATGCAAATTCTGAGAATTGGATGATTGTCGAGAGAAAGAGAGGCCATGTATCACTCTCAACAAAGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - -cttactg
- - - - - - - - - - - - - - - - - - - - aagagga
- - - - - - - - - - - - - - - - - - - - - - - - ctgttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acataaa