Sequence
atgc intronic sequence ATGC exonic sequence...acaatattacaaagaacttcaagccattatagctatccttgggatagacttattatccaacgatgataatttaatcataacaagagcatgataaattgagTATTTTTTATTTATTTTATCACAACCCCTTTTCATGATAGAAGTATTTACCAGTTCTCTAGGGAAATATGTTGGCCTAGCAAAGACAATTAGAGGGTTTC
Basic information
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agacttattatccaacgatgataatttaatcataacaagagcatgataaattgagTATTTTTTATTTATTTTATCACAACCCCTTTTCATGATAGAAGTATTTACCAGTTCTCTAGGGAAATATGTTGGCCTAGCAAAGACAATTAGAGGGTTTC
tcataac putative branch site (score: 2)
atgataatttaatcat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
acaatattacaaagaacttcaagccattatagctatccttgggatagacttattatccaacgatgataatttaatcataacaagagcatgataaattgagTATTTTTTATTTATTTTATCACAACCCCTTTTCATGATAGAAGTATTTACCAGTTCTCTAGGGAAATATGTTGGCCTAGCAAAGACAATTAGAGGGTTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - -caaagaa
- - - - - - - - - tcaagcc
- - - - - - - - - - - - - - - - - -tccttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - atccaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaaga