1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtccacatccttgtctcttcctcttctattctctctcatcaataactctctctattcatgcgtatatctttgtgtacatatacaatttatagATTACGGAGAGGCTTAGAGACCCAAGAGGGCTACGCCGTGGAGGCTTGGCGGCCGGTAGTCCTCGCAATTTCGGCGCCAACGGAGCTCGCAATCGGGGCT
species | Vitis vinifera |
transcript | Vv12s0055g00360.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AAGAAGAGCTTCGCAAGGAGATCGAAGAGCTCCATCGCCAACAATGGGAG ATTACGGAGAGGCTTAGAGACCCAAGAGGGCTACGCCGTGGAGGCTTGGCGEST: gi|110722678|gb|EE099124.1|EE099124
genomic: AAGAAGAGCTTCGCAAGGAGATCGAAGAGCTCCATCGCCAACAATGGGAGgtccacatcc ... caatttatagATTACGGAGAGGCTTAGAGACCCAAGAGGGCTACGCCGTGGAGGCTTGGCG
EST: AAGAAGAGCTTCGCAAGGAGATCGAAGAGCTCCATCGCCAACAATGGGAG ATTACGGAGAGGCTTAGAGACCCAAGAGGGCTACGCCGTGGAGGCTTGGCGEST: gi|161717479|gb|FC067864.1|FC067864
genomic: AAGAAGAGCTTCGCAAGGAGATCGAAGAGCTCCATCGCCAACAATGGGAGgtccacatcc ... caatttatagATTACGGAGAGGCTTAGAGACCCAAGAGGGCTACGCCGTGGAGGCTTGGCG
EST: AAGAAGAGCTTCGCAAGGAGATCGAAGAGCTCCATCGCCAACAATGGGAG ATTACGGAGAGGCTTAGAGACCCAAGAGGGCTACGCCGTGGAGGCTTGGCGEST: gi|110711839|gb|EE088776.1|EE088776
genomic: AAGAAGAGCTTCGCAAGGAGATCGAAGAGCTCCATCGCCAACAATGGGAGgtccacatcc ... caatttatagATTACGGAGAGGCTTAGAGACCCAAGAGGGCTACGCCGTGGAGGCTTGGCG
EST: AAGAAGAGCTTCGCAAGGAGATCGAAGAGCTCCATCGCCAACAATGGGAG ATTACGGAGAGGCTTAGAGACCCAAGAGGGCTACGCCGTGGAGGCTTGGCGEST: gi|161714363|gb|FC063204.1|FC063204
genomic: AAGAAGAGCTTCGCAAGGAGATCGAAGAGCTCCATCGCCAACAATGGGAGgtccacatcc ... caatttatagATTACGGAGAGGCTTAGAGACCCAAGAGGGCTACGCCGTGGAGGCTTGGCG
EST: AAGAAGAGCTTCGCAAGGAGATCGAAGAGCTCCATCGCCAACAATGGGAG ATTACGGAGAGGCTTAGAGACCCAAGAGGGCTACGCCGTGGAGGCTTGGCGEST: gi|110712516|gb|EE090229.1|EE090229
genomic: AAGAAGAGCTTCGCAAGGAGATCGAAGAGCTCCATCGCCAACAATGGGAGgtccacatcc ... caatttatagATTACGGAGAGGCTTAGAGACCCAAGAGGGCTACGCCGTGGAGGCTTGGCG
EST: AAGAAGAGCTTCGCAAGGAGATCGAAGAGCTCCATCGCCAACAATGGGAG ATTACGGAGAGGCTTAGAGACCCAAGAGGGCTACGCCGTGGAGGCTTGGCG
genomic: AAGAAGAGCTTCGCAAGGAGATCGAAGAGCTCCATCGCCAACAATGGGAGgtccacatcc ... caatttatagATTACGGAGAGGCTTAGAGACCCAAGAGGGCTACGCCGTGGAGGCTTGGCG
atcaataactctctctattcatgcgtatatctttgtgtacatatacaatttatagATTACGGAGAGGCTTAGAGACCCAAGAGGGCTACGCCGTGGAGGCTTGGCGGCCGGTAGTCCTCGCAATTTCGGCGCCAACGGAGCTCGCAATCGGGGCT
caataac putative branch site (score: 2)
tacatatacaatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtccacatccttgtctcttcctcttctattctctctcatcaataactctctctattcatgcgtatatctttgtgtacatatacaatttatagATTACGGAGAGGCTTAGAGACCCAAGAGGGCTACGCCGTGGAGGCTTGGCGGCCGGTAGTCCTCGCAATTTCGGCGCCAACGGAGCTCGCAATCGGGGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT