Sequence
atgc intronic sequence ATGC exonic sequence...tatcacagttataacatctttgtcatttgttggatgtggcaaatttggaattggaattataagaataaacttgttgggcacaatgacttcaatgacacagGATTTTTGATACTGGCAACAATGATTTCAATAACTCGAATATTCCGAGCTCTTCTGAGTTTAAAAACAAGCCTGATGGTTGGGAAACAATATCAAAGGCC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0034g01100.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA02G11760.1 (Glycine max), 3'ss of exon 1
---tatcacagttataacatctttgtcatttgttggatgtggcaaatttggaat-tggaattataagaataaacttgttgggcacaatgacttcaatgac-acagGATTTTTGATACTGGCAACAATGATTTCAATAACTCGAATATTCCGAGCTCTTCTGAGTTTAAAAACAAGCCTGATGGTTGGGAAACAATATCAAAGGCC---
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cagcatcatagttgtagcacacat-tcatct-ttatttttatcaaatttcacacattggatca-atttatgaattt--tgtacttaaatcccctaacgactgcagCATTTTTGACCCTGGCAATAATGATCTCAACAATGTGCAAGTTCAAA---CTTCTGAGTTCAAAAACATGCCTGATGGATGGGAAACAATATCAAAAAATCAA
upper sequence: Vv12s0034g01100.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA01G05360.1 (Glycine max), 3'ss of exon 1
tatcacagttataacatctttgtcatt-tgttggatgtggcaaat-ttggaattggaattataagaataaacttgttgggcacaatgacttcaatgac-acagGATTTTTGATACTGGCAACAATGATTTCAATAACTCGAATATTCCGAGCTCTTCTGAGTTTAAAAACAAGCCTGATGGTTGGGAAACAATATCAAAGGCC---
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cttcatagttgtagcatattcatctttatttttatcctgtcacacattggaattggatctactt--atgaattttgtactta-aatcccctgaacaactgcagCATTTTTGACCCTGGCAATAATAATCTCAACAATGCGCATGTTCAAA---CTTCTGATTTCAAAAACATGCCTGATGGATGGGAAACAATATCAAAAAATCAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tggaattggaattataagaataaacttgttgggcacaatgacttcaatgacacagGATTTTTGATACTGGCAACAATGATTTCAATAACTCGAATATTCCGAGCTCTTCTGAGTTTAAAAACAAGCCTGATGGTTGGGAAACAATATCAAAGGCC
aattataagaataaac TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tatcacagttataacatctttgtcatttgttggatgtggcaaatttggaattggaattataagaataaacttgttgggcacaatgacttcaatgacacagGATTTTTGATACTGGCAACAATGATTTCAATAACTCGAATATTCCGAGCTCTTCTGAGTTTAAAAACAAGCCTGATGGTTGGGAAACAATATCAAAGGCC
- - - - - - - - - - - - - - - -ggatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacaatg