Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgttgctttcttggcctataatagaatttgaaaatcctatcttgttttggcgtcggcttttcctgaaattagttttgattgtgtaatttgtttacttcagGAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCG

Basic information

species Vitis vinifera
transcript Vv11s0065g00320.t01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351043926|gb|FQ431357.1|FQ431357
EST:     CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCG                         GAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
genomic: CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCGgttctacttc ... tttacttcagGAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
EST: gi|351031738|gb|FQ459995.1|FQ459995
EST:     CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCG                         GAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
genomic: CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCGgttctacttc ... tttacttcagGAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
EST: gi|351021488|gb|FQ446032.1|FQ446032
EST:     CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCG                         GAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
genomic: CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCGgttctacttc ... tttacttcagGAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
EST: gi|110731755|gb|EE106442.1|EE106442
EST:     CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCG                         GAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
genomic: CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCGgttctacttc ... tttacttcagGAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
EST: gi|352794354|gb|FQ481585.1|FQ481585
EST:     CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCG                         GAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
genomic: CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCGgttctacttc ... tttacttcagGAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
EST: gi|161709367|gb|FC059696.1|FC059696
EST:     CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCG                         GAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
genomic: CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCGgttctacttc ... tttacttcagGAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
EST: gi|110385861|gb|EC950417.1|EC950417
EST:     CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCG                         GAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
genomic: CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCGgttctacttc ... tttacttcagGAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
EST: gi|349822011|gb|FQ408340.1|FQ408340
EST:     CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCC                         GAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
genomic: CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCGgttctacttc ... tttacttcagGAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
EST: gi|351026847|gb|FQ436500.1|FQ436500
EST:     CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCG                         GAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
genomic: CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCGgttctacttc ... tttacttcagGAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
EST: gi|351025243|gb|FQ433660.1|FQ433660
EST:     CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCG                         GAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
genomic: CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCGgttctacttc ... tttacttcagGAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
EST: gi|351045391|gb|FQ447656.1|FQ447656
EST:     CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCG                         GAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
genomic: CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCGgttctacttc ... tttacttcagGAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
EST: gi|351041115|gb|FQ444092.1|FQ444092
EST:     CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCG                         GAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
genomic: CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCGgttctacttc ... tttacttcagGAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
EST: gi|351022613|gb|FQ447135.1|FQ447135
EST:     CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCG                         GAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
genomic: CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCGgttctacttc ... tttacttcagGAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
EST: gi|351040449|gb|FQ434582.1|FQ434582
EST:     CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCC                         GAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
genomic: CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCGgttctacttc ... tttacttcagGAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
EST: gi|349809487|gb|FQ414377.1|FQ414377
EST:     CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCC                         GAGTTTATGTTGCGAATTGAGCATCCGACAAGATCACGCAGCTGACTGATA
genomic: CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCGgttctacttc ... tttacttcagGAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
EST: gi|349824245|gb|FQ417632.1|FQ417632
EST:     CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCG                         GAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
genomic: CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCGgttctacttc ... tttacttcagGAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
EST: gi|351016593|gb|FQ424020.1|FQ424020
EST:     CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCG                         GAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
genomic: CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCGgttctacttc ... tttacttcagGAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
EST: gi|110689479|gb|EE065738.1|EE065738
EST:     CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCG                         GAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
genomic: CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCGgttctacttc ... tttacttcagGAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
EST: gi|352786908|gb|FQ481283.1|FQ481283
EST:     CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCG                         GAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
genomic: CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCGgttctacttc ... tttacttcagGAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
EST: gi|351043726|gb|FQ431079.1|FQ431079
EST:     CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCG                         GAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
genomic: CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCGgttctacttc ... tttacttcagGAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
EST: gi|351025600|gb|FQ426614.1|FQ426614
EST:     CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCG                         GAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
genomic: CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCGgttctacttc ... tttacttcagGAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
EST: gi|351025823|gb|FQ427835.1|FQ427835
EST:     CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCG                         GAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
genomic: CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCGgttctacttc ... tttacttcagGAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
EST: gi|351038974|gb|FQ457649.1|FQ457649
EST:     CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCG                         GAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
genomic: CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCGgttctacttc ... tttacttcagGAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
EST: gi|351018428|gb|FQ439240.1|FQ439240
EST:     CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCG                         GAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
genomic: CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCGgttctacttc ... tttacttcagGAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
EST: gi|37183940|gb|CF603294.1|CF603294
EST:     CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCG                         GAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
genomic: CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCGgttctacttc ... tttacttcagGAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
EST: gi|351036694|gb|FQ457407.1|FQ457407
EST:     CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCG                         GAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
genomic: CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCGgttctacttc ... tttacttcagGAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
EST: gi|351031403|gb|FQ445428.1|FQ445428
EST:     CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCG                         GAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
genomic: CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCGgttctacttc ... tttacttcagGAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
EST: gi|351029736|gb|FQ427576.1|FQ427576
EST:     CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCG                         GAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
genomic: CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCGgttctacttc ... tttacttcagGAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
EST: gi|351032941|gb|FQ461830.1|FQ461830
EST:     CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCG                         GAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
genomic: CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCGgttctacttc ... tttacttcagGAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
EST: gi|349829562|gb|FQ420094.1|FQ420094
EST:     CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCG                         GAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
genomic: CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCGgttctacttc ... tttacttcagGAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
EST: gi|294965672|gb|GW837271.1|GW837271
EST:     CATCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCG                         GAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
genomic: CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCGgttctacttc ... tttacttcagGAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
EST: gi|351051948|gb|FQ450639.1|FQ450639
EST:     CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCG                         GAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
genomic: CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCGgttctacttc ... tttacttcagGAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
EST: gi|351024691|gb|FQ433106.1|FQ433106
EST:     CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCG                         GAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
genomic: CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCGgttctacttc ... tttacttcagGAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
EST: gi|351017168|gb|FQ424595.1|FQ424595
EST:     CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCG                         GAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
genomic: CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCGgttctacttc ... tttacttcagGAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
EST: gi|351017430|gb|FQ435783.1|FQ435783
EST:     CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCG                         GAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
genomic: CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCGgttctacttc ... tttacttcagGAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
EST: gi|351017804|gb|FQ436157.1|FQ436157
EST:     CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCG                         GAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
genomic: CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCGgttctacttc ... tttacttcagGAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
EST: gi|349827569|gb|FQ422437.1|FQ422437
EST:     CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCG                         GAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
genomic: CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCGgttctacttc ... tttacttcagGAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
EST: gi|156725857|gb|EV229968.1|EV229968
EST:     CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCG                         GAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
genomic: CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCGgttctacttc ... tttacttcagGAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
EST: gi|349812437|gb|FQ407056.1|FQ407056
EST:     CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCG                         GAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAACTGACTGATA
genomic: CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCGgttctacttc ... tttacttcagGAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
EST: gi|351037015|gb|FQ460725.1|FQ460725
EST:     CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCG                         GAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
genomic: CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCGgttctacttc ... tttacttcagGAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
EST: gi|110699436|gb|EE076435.1|EE076435
EST:     CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCG                         GAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
genomic: CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCGgttctacttc ... tttacttcagGAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
EST: gi|352786494|gb|FQ479103.1|FQ479103
EST:     CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCG                         GAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
genomic: CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCGgttctacttc ... tttacttcagGAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
EST: gi|294964049|gb|GW837852.1|GW837852
EST:     CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCG                         GAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
genomic: CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCGgttctacttc ... tttacttcagGAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
EST: gi|349824515|gb|FQ413182.1|FQ413182
EST:     CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCG                         GAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
genomic: CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCGgttctacttc ... tttacttcagGAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
EST: gi|351053908|gb|FQ441674.1|FQ441674
EST:     CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCG                         GAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
genomic: CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCGgttctacttc ... tttacttcagGAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
EST: gi|349825823|gb|FQ423118.1|FQ423118
EST:     CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCG                         GAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
genomic: CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCGgttctacttc ... tttacttcagGAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
EST: gi|352790114|gb|FQ481313.1|FQ481313
EST:     CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCG                         GAGTTTATGTTGCGAATCGAGCATCCGGCAAGATCACGCAGCTGACTGATA
genomic: CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCGgttctacttc ... tttacttcagGAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
EST: gi|351055242|gb|FQ440581.1|FQ440581
EST:     CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCG                         GAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
genomic: CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCGgttctacttc ... tttacttcagGAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
EST: gi|349809005|gb|FQ407454.1|FQ407454
EST:     CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCG                         GAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
genomic: CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCGgttctacttc ... tttacttcagGAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
EST: gi|349813553|gb|FQ413787.1|FQ413787
EST:     CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACCAGCACCG                         GAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
genomic: CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCGgttctacttc ... tttacttcagGAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
EST: gi|351024243|gb|FQ423666.1|FQ423666
EST:     CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCG                         GAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
genomic: CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCGgttctacttc ... tttacttcagGAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
EST: gi|349814982|gb|FQ410205.1|FQ410205
EST:     CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCG                         GAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
genomic: CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCGgttctacttc ... tttacttcagGAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
EST: gi|161715904|gb|FC065505.1|FC065505
EST:     CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCG                         GAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
genomic: CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCGgttctacttc ... tttacttcagGAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
EST: gi|351031621|gb|FQ459878.1|FQ459878
EST:     CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCG                         GAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
genomic: CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCGgttctacttc ... tttacttcagGAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
EST: gi|352794401|gb|FQ481632.1|FQ481632
EST:     CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCG                         GAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
genomic: CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCGgttctacttc ... tttacttcagGAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
EST: gi|30304254|gb|CB981048.1|CB981048
EST:     CGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCG                         GAGTTTATGCCGCTAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
genomic: CGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCGgttctacttc ... tttacttcagGAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
EST: gi|351013648|gb|FQ429789.1|FQ429789
EST:     CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCG                         GAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
genomic: CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCGgttctacttc ... tttacttcagGAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
EST: gi|71888991|gb|DT038046.1|DT038046
EST:     CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCG                         GAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
genomic: CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCGgttctacttc ... tttacttcagGAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
EST: gi|351021529|gb|FQ446073.1|FQ446073
EST:     CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCG                         GAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
genomic: CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCGgttctacttc ... tttacttcagGAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
EST: gi|161719520|gb|FC066431.1|FC066431
EST:     CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCG                         GAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
genomic: CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCGgttctacttc ... tttacttcagGAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
EST: gi|110382788|gb|EC947109.1|EC947109
EST:     CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCG                         GAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
genomic: CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCGgttctacttc ... tttacttcagGAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
EST: gi|349812407|gb|FQ406428.1|FQ406428
EST:     CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCG                         GAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
genomic: CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCGgttctacttc ... tttacttcagGAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
EST: gi|349810332|gb|FQ401778.1|FQ401778
EST:     CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCG                         GAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
genomic: CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCGgttctacttc ... tttacttcagGAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
EST: gi|351043642|gb|FQ451573.1|FQ451573
EST:     CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCG                         GAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
genomic: CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCGgttctacttc ... tttacttcagGAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
EST: gi|349830158|gb|FQ420418.1|FQ420418
EST:     CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCG                         GAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGTAGCTGACTGATA
genomic: CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCGgttctacttc ... tttacttcagGAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
EST: gi|71869506|gb|DT018561.1|DT018561
EST:     CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCG                         GAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
genomic: CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCGgttctacttc ... tttacttcagGAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
EST: gi|352789722|gb|FQ476320.1|FQ476320
EST:     CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCG                         GAGTTTATGTTGCGAATCGAGCATCCGGCAAGATCACGCAGCTGACTGATA
genomic: CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCGgttctacttc ... tttacttcagGAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
EST: gi|34544506|gb|CF512738.1|CF512738
EST:     CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCG                         GAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
genomic: CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCGgttctacttc ... tttacttcagGAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
EST: gi|349824484|gb|FQ413151.1|FQ413151
EST:     CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCG                         GAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
genomic: CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCGgttctacttc ... tttacttcagGAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
EST: gi|71874115|gb|DT023170.1|DT023170
EST:     CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCG                         GAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA
genomic: CACCTACAACGGAGGCGTCGTTCTTGGCGCCGATTCTCGAACTAGCACCGgttctacttc ... tttacttcagGAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttggcgtcggcttttcctgaaattagttttgattgtgtaatttgtttacttcagGAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCG
                           ttttgat  putative branch site (score: 4)
                                             tttacttc  putative PPT
                    aaattagttttgatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgttgctttcttggcctataatagaatttgaaaatcctatcttgttttggcgtcggcttttcctgaaattagttttgattgtgtaatttgtttacttcagGAGTTTATGTTGCGAATCGAGCATCCGACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA
tgttgct
- - - -ttcttgg
- - - - - - - - - -aatagaa
- - - - - - - - - - - - - - -gaaaatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaatta