Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161707383|gb|FC056880.1|FC056880EST: AAACAAAGGCTCTTCTCCACCAAGCTTGCGAGAAATGGGGGTTCTTTCAG ATCGACAACCATGGAGTTGACAAGAAGTTGATGGAGAAGGTGAAGCACTTA
genomic: AAACAAAGGCTCTTCTCCACCAAGCTTGCGAGAAATGGGGGTTCTTTCAGgtaatgagaa ... atatctgcagATCGACAACCATGGAGTTGACAAGAAGTTGATGGAGAAGGTGAAGCACTTA
EST:
gi|161720580|gb|FC069908.1|FC069908EST: AAACAAAGGCTCTTCTCCACCAAGCTTGCGAGAAATGGGGGTTCTTTCAG ATCGACAACCATGGAGTTGACAAGAAGTTGATGGAGAAGGTG-A-CACTTA
genomic: AAACAAAGGCTCTTCTCCACCAAGCTTGCGAGAAATGGGGGTTCTTTCAGgtaatgagaa ... atatctgcagATCGACAACCATGGAGTTGACAAGAAGTTGATGGAGAAGGTGAAGCACTTA
EST:
gi|161710001|gb|FC058083.1|FC058083EST: AAACAAAGGCTCTTCTCCACCAAGCTTGCGAGAAATGGGGGTTCTTTCAG ATCGACAACCATGGAGTTGACAAGAAGTTGATGGAGAAGGTGAAGCACTTA
genomic: AAACAAAGGCTCTTCTCCACCAAGCTTGCGAGAAATGGGGGTTCTTTCAGgtaatgagaa ... atatctgcagATCGACAACCATGGAGTTGACAAGAAGTTGATGGAGAAGGTGAAGCACTTA
EST:
gi|161720795|gb|FC070303.1|FC070303EST: AAACAAAGGCTCTTCTCCACCAAGCTTGCGAGAAATGGGGGTTCTTTCAG ATCGACAACCATGGAGTTGACAAGAAGTTGATGGAGAAGGTGAAGCACTTA
genomic: AAACAAAGGCTCTTCTCCACCAAGCTTGCGAGAAATGGGGGTTCTTTCAGgtaatgagaa ... atatctgcagATCGACAACCATGGAGTTGACAAGAAGTTGATGGAGAAGGTGAAGCACTTA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attgaaactttgttctgagctttgttctaatagctgtgatgattaatatctgcagATCGACAACCATGGAGTTGACAAGAAGTTGATGGAGAAGGTGAAGCACTTAGTGAATACACACTATGAGGAAATCATGAAGAGGAGCTTTTATGAGTCAG
atgattaatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaatgagaagagatttcatttagattgaaactttgttctgagctttgttctaatagctgtgatgattaatatctgcagATCGACAACCATGGAGTTGACAAGAAGTTGATGGAGAAGGTGAAGCACTTAGTGAATACACACTATGAGGAAATCATGAAGAGGAGCTTTTATGAGTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT