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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatgtatacaattgataagggttttgttgtgcgctcactagatttcctgttgaaactaattgtaagcctgtgcttttgtttcaatatacagTACCAGATGGACCACCTCAGAGGAAATGGCCACAAAATCCTCCATCCATGCACCCACACCCAGTGATGCCTGGATTACTGCCACCAAGTGCTCACAATAG

Basic information

species Vitis vinifera
transcript Vv11s0016g02150.t01
intron # 1
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actagatttcctgttgaaactaattgtaagcctgtgcttttgtttcaatatacagTACCAGATGGACCACCTCAGAGGAAATGGCCACAAAATCCTCCATCCATGCACCCACACCCAGTGATGCCTGGATTACTGCCACCAAGTGCTCACAATAG
                 aactaat  putative branch site (score: 2)
                                    cttttgtttc  putative PPT
                                     ttttgtttcaatata  TA-rich tract