Sequence
atgc intronic sequence ATGC exonic sequencegtaaatacttgtttcatctttcattcaaccttgtcctccaggattaaataatatgatgacaatatacaataaaacctaaatttggtttattttacatggaactgcagTGAGATTAGGGCCTAAGATCTCTGAAACTGTGAAAGGGAAGTTGAGCTTGGGGGCTAGAATTCTTCAACTAGGGGGAGTGAAGAGAGTTTTCAAGCAAAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0071g00360.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA20G01410.1 (Glycine max), 3'ss of exon 2
gtaaatacttgtttcatctttcattcaaccttgtcctccaggattaaataatatgatgacaatatacaataaaacctaaatttggt--ttatt--ttacatggaactgcagTGAGATTAGGGCCTAAGATCTCTGAAACTGTGAAAGGGAAGTTGAGCTTGGGGGCTAGAATTCTTCAACTAGGGGGAGTGAAGAGAGTTTTCAAGCAAAT
|| | | | || | ||| | | | || ||| | | | ||||||||| | | ||| | |||| || | | || | |||||||| | ||||| | ||| |||| || || | ||||||||||| | |||||||||||||||||| | || || ||||||||||| ||||| ||| |
---------aattcaaccatgcaatttgacttaattttctcca--aatcaatttaacctccatatacaatcctatattgattcaatatttataaatttgacgaaatttcagTGAGACTGGGGCCAACGATAACTGAGACAGTTATGGGGAAGTTGAGACTAGGGGCTAGAATTCTTCAAGTTGGTGGTGTGAAGAGAGTCTTCAACCAATT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atgatgacaatatacaataaaacctaaatttggtttattttacatggaactgcagTGAGATTAGGGCCTAAGATCTCTGAAACTGTGAAAGGGAAGTTGAGCTTGGGGGCTAGAATTCTTCAACTAGGGGGAGTGAAGAGAGTTTTCAAGCAAAT
acctaaa putative branch site (score: 3)
aatatacaataaaacc TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaatacttgtttcatctttcattcaaccttgtcctccaggattaaataatatgatgacaatatacaataaaacctaaatttggtttattttacatggaactgcagTGAGATTAGGGCCTAAGATCTCTGAAACTGTGAAAGGGAAGTTGAGCTTGGGGGCTAGAATTCTTCAACTAGGGGGAGTGAAGAGAGTTTTCAAGCAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA