1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttctgattggagtagctctaattttggagcaccatatatgcatgtgcttccaacattattgttgccaattttacttattagaagatcaaaatgatgatagGTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATCTGTGTGAAGAACCAGGCCATCGGGGTTAACTTCATTGATGTCTACTTCC
species | Vitis vinifera |
transcript | Vv09s0002g08480.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAG GTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATCEST: gi|351032149|gb|FQ460406.1|FQ460406
genomic: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAGgtctgtttct ... atgatgatagGTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
EST: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAG GTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATCEST: gi|351035816|gb|FQ463661.1|FQ463661
genomic: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAGgtctgtttct ... atgatgatagGTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
EST: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAG GTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATCEST: gi|351054048|gb|FQ441814.1|FQ441814
genomic: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAGgtctgtttct ... atgatgatagGTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
EST: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAG GTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATCEST: gi|351053731|gb|FQ441497.1|FQ441497
genomic: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAGgtctgtttct ... atgatgatagGTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
EST: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAG GTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATCEST: gi|351047232|gb|FQ454843.1|FQ454843
genomic: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAGgtctgtttct ... atgatgatagGTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
EST: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAG GTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATCEST: gi|351035068|gb|FQ458425.1|FQ458425
genomic: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAGgtctgtttct ... atgatgatagGTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
EST: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAG GTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATCEST: gi|22012389|gb|BQ797423.1|BQ797423
genomic: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAGgtctgtttct ... atgatgatagGTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
EST: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAG GTCCTGAAGTGGGAGGATGTTGAAATEST: gi|351057094|gb|FQ450801.1|FQ450801
genomic: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAGgtctgtttct ... atgatgatagGTCCTGAAGTGGGAGGATGTTGAAAT
EST: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAG GTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATCEST: gi|351032442|gb|FQ458807.1|FQ458807
genomic: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAGgtctgtttct ... atgatgatagGTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
EST: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAG GTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATCEST: gi|351035596|gb|FQ463441.1|FQ463441
genomic: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAGgtctgtttct ... atgatgatagGTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
EST: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAG GTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATCEST: gi|351055356|gb|FQ441954.1|FQ441954
genomic: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAGgtctgtttct ... atgatgatagGTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
EST: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAG GTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATCEST: gi|351046818|gb|FQ454428.1|FQ454428
genomic: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAGgtctgtttct ... atgatgatagGTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
EST: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAG GTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATCEST: gi|351035928|gb|FQ463773.1|FQ463773
genomic: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAGgtctgtttct ... atgatgatagGTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
EST: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAG GTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATCEST: gi|351046011|gb|FQ441394.1|FQ441394
genomic: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAGgtctgtttct ... atgatgatagGTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
EST: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAG GTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATCEST: gi|351042210|gb|FQ442677.1|FQ442677
genomic: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAGgtctgtttct ... atgatgatagGTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
EST: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAG GTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATCEST: gi|351038021|gb|FQ460763.1|FQ460763
genomic: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAGgtctgtttct ... atgatgatagGTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
EST: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAG GTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATCEST: gi|351035096|gb|FQ458453.1|FQ458453
genomic: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAGgtctgtttct ... atgatgatagGTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
EST: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAG GTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATCEST: gi|351031928|gb|FQ460185.1|FQ460185
genomic: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAGgtctgtttct ... atgatgatagGTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
EST: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAG GTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATCEST: gi|351042201|gb|FQ442668.1|FQ442668
genomic: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAGgtctgtttct ... atgatgatagGTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
EST: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAG GTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATCEST: gi|349808218|gb|FQ403405.1|FQ403405
genomic: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAGgtctgtttct ... atgatgatagGTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
EST: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAG GTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATCEST: gi|351044422|gb|FQ442953.1|FQ442953
genomic: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAGgtctgtttct ... atgatgatagGTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
EST: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAG GTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATCEST: gi|351034896|gb|FQ458253.1|FQ458253
genomic: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAGgtctgtttct ... atgatgatagGTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
EST: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAG GTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATCEST: gi|110699271|gb|EE076123.1|EE076123
genomic: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAGgtctgtttct ... atgatgatagGTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
EST: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAG GTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATCEST: gi|352764316|gb|FQ471296.1|FQ471296
genomic: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAGgtctgtttct ... atgatgatagGTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
EST: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAG GTCCTGAAGTGGGAGGATGTAGAAATAGGAGAGCCAAATGAAGGTAAGATCEST: gi|352789828|gb|FQ478643.1|FQ478643
genomic: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAGgtctgtttct ... atgatgatagGTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
EST: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAG GTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATCEST: gi|351053674|gb|FQ440183.1|FQ440183
genomic: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAGgtctgtttct ... atgatgatagGTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
EST: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAG GTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATCEST: gi|352798966|gb|FQ480815.1|FQ480815
genomic: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAGgtctgtttct ... atgatgatagGTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
EST: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAG GTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATCEST: gi|349828369|gb|FQ416322.1|FQ416322
genomic: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAGgtctgtttct ... atgatgatagGTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
EST: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAG GTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATCEST: gi|349812535|gb|FQ407154.1|FQ407154
genomic: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAGgtctgtttct ... atgatgatagGTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
EST: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAG GTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATCEST: gi|349832934|gb|FQ423056.1|FQ423056
genomic: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAGgtctgtttct ... atgatgatagGTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
EST: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAG GTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATCEST: gi|110724513|gb|EE100407.1|EE100407
genomic: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAGgtctgtttct ... atgatgatagGTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
EST: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAG GTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATCEST: gi|349824576|gb|FQ413243.1|FQ413243
genomic: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAGgtctgtttct ... atgatgatagGTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
EST: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAG GTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATCEST: gi|349819399|gb|FQ412293.1|FQ412293
genomic: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAGgtctgtttct ... atgatgatagGTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
EST: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAG GTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATCEST: gi|351032220|gb|FQ460477.1|FQ460477
genomic: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAGgtctgtttct ... atgatgatagGTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
EST: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAG GTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
genomic: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAGgtctgtttct ... atgatgatagGTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
gcttccaacattattgttgccaattttacttattagaagatcaaaatgatgatagGTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATCTGTGTGAAGAACCAGGCCATCGGGGTTAACTTCATTGATGTCTACTTCC
aattttacttattaga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctgattggagtagctctaattttggagcaccatatatgcatgtgcttccaacattattgttgccaattttacttattagaagatcaaaatgatgatagGTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATCTGTGTGAAGAACCAGGCCATCGGGGTTAACTTCATTGATGTCTACTTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- -tgattgg
- - - - - - - - - - - - - -agcacca
- - - - - - - - - - - - - - - - - - - - catgtgc
- - - - - - - - - - - - - - - - - - - - - - - - tccaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagatcaa