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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgcttttgtccttgtctttacctctccttttcatggatgctctatctttttgagtttctaggcggtttcaggcacaatgtgtagctggtgcacacaagcatagtgttgcatattcatatgttttattccattttcaccctacccatttgtgtataaatacagtttctcattttgggttttcttcattgcagTACCTCTTCATATTCATTACAATAGGTGGCCTCTTTACTGCACTTGCCCGGTCCGTGACGATGAGCTACTCTAATCATTCTATGGGTTCTG

Basic information

species Vitis vinifera
transcript Vv09s0002g06010.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g06010.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA15G01350.1 (Glycine max), 3'ss of exon 1
---gtctgcttttgtccttgtctttacctctccttttcatggatgctctatctttttgagtttctaggcggtttcaggcacaatgtgtagctggtgcacacaagcatagtgttgcatattcatatgttttattccattttcaccctacccatttgtgtataaatacagtttctcattttgggttttcttcattgcagTACCTCTTCATATTCATTACAATAG--------GTGGCCTCTTTACTGCACTTGCCCGGTCCGTGACGATGAGCTACTCTAATCATTCTATGGGTTCTG
     ||||||||||| ||||||||||||||||||||||||||| | ||             |||||| |||| |||   || | | |||    |  ||| |  ||| |   |||||||||| |  ||||||||||  | |||| ||||| | || |||||||      |   |||  ||  ||||||||||||||| ||||||||||| ||||| || | |        | ||  |  || |  ||||| |      |   |  |||||  |  |  ||  |  |||||| ||||
gtttcctgcttttgtctttgtctttacctctccttttcatggataccct-------------tctaggaggttgcagcagcactctatagtcactatacata--catggcaatgcatattcacacattttattccaactccaccatacccttctgggtataaaggggcatcaccatcctgcattttcttcattgcagAACCTCTTCATACTCATTGCAGTTGCAGTACGTGGGGGGTGCTTTCAACACTTTCTTCAATCAGCAAAATGAGTCATGCACATTCTCATATGGGCTCTG

upper sequence: Vv09s0002g06010.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA13G43990.1 (Glycine max), 3'ss of exon 2
---gtctgcttttgtccttgtctttacctct--ccttttcatggatgctctatctttttgagtttctaggcggtttcaggcacaatgtgtagctggtg--cacaca-agcatagtgttgcatattcatatgttttattccattttcaccctacc------catttgtgtataaatacagtttctcattttgggttttcttcattgcagTACCTCTTCATATTCATTACAATAGGTG-GCCTCTTTACTGCACTTGC--CCGGTCCGTGACGATGAGCTACTCTAATCATTC-TATGGGTTCTG-----
     ||||||||||| ||||||||||||||  ||||||||||||| | ||             |||| |||||| |||   || | | |||    |    | ||| | ||| |   |||||||||| | |||||||||||  | |||| ||||      | | || |||||||      |    ||  ||  ||||||||||||||| ||||||||||| ||||| || | |  |  | |      ||    |||   |    | |     | | | |    ||| | || |     ||||      
gtttcctgcttttgtctttgtctttacctctctccttttcatggataccct-------------tctaagcggttgcagctgcactctatagtcactaactaaacataacatggcaatgcatattcacacgttttattccaagtccaccatacccttcttcttctgggtataaaggggcatcactatcctgcattttcttcattgcagAACCTCTTCATACTCATTGCAGTTGCAGTACGTGCGGGGTGGGAGTGCTTTCAACACTTTCTCTTCAACCAGCAAAATGAGTCATGCACATTCTCATATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccctacccatttgtgtataaatacagtttctcattttgggttttcttcattgcagTACCTCTTCATATTCATTACAATAGGTGGCCTCTTTACTGCACTTGCCCGGTCCGTGACGATGAGCTACTCTAATCATTCTATGGGTTCTG
                                        ttttcttcatt  CT-rich tract
        atttgtgtataaata  TA-rich tract