Sequence
atgc intronic sequence ATGC exonic sequencegtgagtgttgtttcaagcagttctgcatgtttactactttctcatgcaccattgaagcataccatactttgatatgatatattctttggaatgaataccgggttttatcgcgtaattagtataggtttatcagctgatacttaagcttaagctagtgagtatttcatcatttttttgtggggttttgcagGTATGGAAAGGTGTTCAAGTCTCACATATTTGGGAGCCCAACAATAGTTTCCATTGATGCAGAAGTGAGTAGATTTGTGTTGCAGAGTGATTCAAAGGCC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0002g02080.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA07G01280.1 (Glycine max), 3'ss of exon 4
gtgagtgttgtttcaagcagttctgcatgtttactactttctcatgcaccattgaagcataccatactttgatatgatatattctttggaatgaataccgggttttatcgcgtaattagtataggtttatcagctgatacttaagcttaagctagtgagtatttcatcatttttttgtggggttttgcagGTATGGAAAGGTGTTCAAGTCTCACATATTTGGGAGCCCAACAATAGTTTCCATTGATGCAGAAGTGAGTAGATTTGTGTTGCAGAGTGATTCAAAGGCC
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----------------------------------------------------------------------------------------------------------gttttgtactcaaagttgaatc-----tagaaatttatgttgttttcaacaaggatttggttgtgtt------gcaacttgcagGTATGGCAAGGTGTTTAAGTCACACATATTTGGAAGCCCCACAATTGTTTCCACTGATGCTGATGTGAATAAGTTTATCCTGCAAAGTGATGCAAAGGTT
upper sequence: Vv09s0002g02080.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA08G20690.1 (Glycine max), 3'ss of exon 1
gtgagtgttgtttcaagcagttctgcatgtttactactttctcatgcaccattgaagcataccatactttgatatgatatattctttggaatgaataccgggttttatcgcgtaattagtataggtttatcagctgatactt-aagcttaagctagtgagtatttcatcatttttttgtggggttttgcagGTATGGAAAGGTGTTCAAGTCTCACATATTTGGGAGCCCAACAATAGTTTCCATTGATGCAGAAGTGAGTAGATTTGTGTTGCAGAGTGATTCAAAGGCC
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--------------------------------------------------------------------------------------tgacaaaagtctcatatcatgccttggtttttgtacacaa-----agttgaatcttgaaatttatgttgttttcaatataagatttggtgtgttgcaacttgtagGTATGGCAAGGTGTTCAAGTCACACATATTTGGAAGCCCTACAATTGTTTCAACTGATGCTAGTGTGAATAAGTTTATACTTCAAAGTGATGCAAAAGTT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gatacttaagcttaagctagtgagtatttcatcatttttttgtggggttttgcagGTATGGAAAGGTGTTCAAGTCTCACATATTTGGGAGCCCAACAATAGTTTCCATTGATGCAGAAGTGAGTAGATTTGTGTTGCAGAGTGATTCAAAGGCC
agctgat putative branch site (score: 4)
tatttcatcatttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgagtgttgtttcaagcagttctgcatgtttactactttctcatgcaccattgaagcataccatactttgatatgatatattctttggaatgaataccgggttttatcgcgtaattagtataggtttatcagctgatacttaagcttaagctagtgagtatttcatcatttttttgtggggttttgcagGTATGGAAAGGTGTTCAAGTCTCACATATTTGGGAGCCCAACAATAGTTTCCATTGATGCAGAAGTGAGTAGATTTGTGTTGCAGAGTGATTCAAAGGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT