Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcccatcaattatttctttgtttttccttcgtataggaacattttttctgcaaaatacgtgacggtttgatgttagttactggttgattcagATGTTGTCGATGCATAGGAGGTGGCAAGTGTTTAGAGGAGAAAGCTCAGACCCCAAAGATCTACTGTTCAGTACAAAGCTGTCGTCCATCATTCAATTGA

Basic information

species Vitis vinifera
transcript Vv08s0058g00870.t01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110365049|gb|EC928763.1|EC928763
EST:     GTGTGTTGCTCGACGCCGCTGGCAAGCCGATCGTCTCTCTCCAAAGCAAG                         ATGTTGTCGATGCATAGGAGGTGGCAAGTGTTTAGAGGAGAAAGCTCAGAC
genomic: GTGTGTTGCTCGACGCCGCTGGCAAGCCGATCGTCTCTCTCCAAAGCAAGgtcccatcaa ... gttgattcagATGTTGTCGATGCATAGGAGGTGGCAAGTGTTTAGAGGAGAAAGCTCAGAC
EST: gi|26265422|gb|CA816485.1|CA816485
EST:     GTGTGTTGCTCGACGCCGCTGGCAAGCCGATCGTCTCTCTCCAAAGCAAG                         ATGTTGTCGATGCATAGGAGGTGGCAAGTGTTTAGAGGAGAAAGCTCAGAC
genomic: GTGTGTTGCTCGACGCCGCTGGCAAGCCGATCGTCTCTCTCCAAAGCAAGgtcccatcaa ... gttgattcagATGTTGTCGATGCATAGGAGGTGGCAAGTGTTTAGAGGAGAAAGCTCAGAC
EST: gi|29785915|gb|CB343266.2|CB343266
EST:     GTGTGTTGCTCGACGCCGCTGGCAAGCCGATCGTCTCTCTCCAAAGCAAG                         ATGTTGTCGATGCATAGGAGGTGGCAAGTGTTTAGAGGAGAAAGCTCAGAC
genomic: GTGTGTTGCTCGACGCCGCTGGCAAGCCGATCGTCTCTCTCCAAAGCAAGgtcccatcaa ... gttgattcagATGTTGTCGATGCATAGGAGGTGGCAAGTGTTTAGAGGAGAAAGCTCAGAC
EST: gi|110404339|gb|EC969243.1|EC969243
EST:     GTGTGTTGCTCGACGCCGCTGGCAAGCCGATCGTCTCTCTCCAAAGCAAG                         ATGTTGTCGATGCATAGGAGGTGGCAAGTGTTTAGAGGAGAAAGCTCAGAC
genomic: GTGTGTTGCTCGACGCCGCTGGCAAGCCGATCGTCTCTCTCCAAAGCAAGgtcccatcaa ... gttgattcagATGTTGTCGATGCATAGGAGGTGGCAAGTGTTTAGAGGAGAAAGCTCAGAC
EST: gi|110420930|gb|EC987217.1|EC987217
EST:     GTGTGTTGCTCGACGCCGCTGGCAAGCCGATCGTCTCTCTCCAAAGCAAG                         ATGTTGTCGATGCATAGGAGGTGGCAAGTGTTTAGAGGAGAAAGCTCAGAC
genomic: GTGTGTTGCTCGACGCCGCTGGCAAGCCGATCGTCTCTCTCCAAAGCAAGgtcccatcaa ... gttgattcagATGTTGTCGATGCATAGGAGGTGGCAAGTGTTTAGAGGAGAAAGCTCAGAC
EST: gi|37185357|gb|CF604710.1|CF604710
EST:     GTGTGTTGCTCGACGCCGCTGGCAAGCCGATCGTCTCTCTCCAAAGCAAG                         ATGTTGTCGATGCATAGGAGGTGGCAAGTGTTTAGAGGAGAAAGCTCAGAC
genomic: GTGTGTTGCTCGACGCCGCTGGCAAGCCGATCGTCTCTCTCCAAAGCAAGgtcccatcaa ... gttgattcagATGTTGTCGATGCATAGGAGGTGGCAAGTGTTTAGAGGAGAAAGCTCAGAC
EST: gi|110392163|gb|EC957390.1|EC957390
EST:     GTGTGTTGCTCGACGCCGCTGGCAAGCCGATCGTCTCTCTCCAAAGCAAG                         ATGTTGTCGATGCATAGGAGGTGGCAAGTGTTTAGAGGAGAAAGCTCAGAC
genomic: GTGTGTTGCTCGACGCCGCTGGCAAGCCGATCGTCTCTCTCCAAAGCAAGgtcccatcaa ... gttgattcagATGTTGTCGATGCATAGGAGGTGGCAAGTGTTTAGAGGAGAAAGCTCAGAC
EST: gi|37186444|gb|CF605797.1|CF605797
EST:     GTGTGTTGCTCGACGCCGCTGGCAAGCCGATCGTCTCTCTCCAAAGCAAG                         ATGTTGTCGATGCATAGGAGGTGGCAAGTGTTTAGAGGAGAAAGCTCAGAC
genomic: GTGTGTTGCTCGACGCCGCTGGCAAGCCGATCGTCTCTCTCCAAAGCAAGgtcccatcaa ... gttgattcagATGTTGTCGATGCATAGGAGGTGGCAAGTGTTTAGAGGAGAAAGCTCAGAC
EST: gi|22011529|gb|BQ796563.1|BQ796563
EST:     GTGTGTTGCTCGACGCCGCTGGCAAGCCGATCGTCTCTCTCCAAAGCAAG                         ATGTTGTCGATGCATAGGAGGTGGCAAGTGTTTAGAGGAGAAAGCTCAGAC
genomic: GTGTGTTGCTCGACGCCGCTGGCAAGCCGATCGTCTCTCTCCAAAGCAAGgtcccatcaa ... gttgattcagATGTTGTCGATGCATAGGAGGTGGCAAGTGTTTAGAGGAGAAAGCTCAGAC
EST: gi|110368952|gb|EC933091.1|EC933091
EST:     GTGTGTTGCTCGACGCCGCTGGCAAGCCGATCGTCTCTCTCCAAAGCAAG                         ATGTTGTCGATGCATAGGAGGTGGCAAGTGTTTAGAGGAGAAAGCTCAGAC
genomic: GTGTGTTGCTCGACGCCGCTGGCAAGCCGATCGTCTCTCTCCAAAGCAAGgtcccatcaa ... gttgattcagATGTTGTCGATGCATAGGAGGTGGCAAGTGTTTAGAGGAGAAAGCTCAGAC
EST: gi|29785571|gb|CB342715.2|CB342715
EST:     GTGTGTTGCTCGACGCCGCTGGCAAGCCGATCGTCTCTCTCCAAAGCAAG                         ATGTTGTCGATGCATAGGAGGTGGCAAGTGTTTAGAGGAGAAAGCTCAGAC
genomic: GTGTGTTGCTCGACGCCGCTGGCAAGCCGATCGTCTCTCTCCAAAGCAAGgtcccatcaa ... gttgattcagATGTTGTCGATGCATAGGAGGTGGCAAGTGTTTAGAGGAGAAAGCTCAGAC
EST: gi|22011435|gb|BQ796469.1|BQ796469
EST:     GTGTGTTGCTCGACGCCGCTGGCAAGCCGATCGTCTCTCTCCAAAGCAAG                         ATGTTGTCGATGCATAGGAGGTGGCAAGTGTTTAGAGGAGAAAGCTCAGAC
genomic: GTGTGTTGCTCGACGCCGCTGGCAAGCCGATCGTCTCTCTCCAAAGCAAGgtcccatcaa ... gttgattcagATGTTGTCGATGCATAGGAGGTGGCAAGTGTTTAGAGGAGAAAGCTCAGAC
EST: gi|26257073|gb|CA808136.1|CA808136
EST:     GTGTGTTGCTCGACGCCGCTGGCAAGCCGATCGTCTCTCTCCAAAGCAAG                         ATGTTGTCGATGCATAGGAGGTGGCAAGTGTTTAGAGGAGAAAGCTCAGAC
genomic: GTGTGTTGCTCGACGCCGCTGGCAAGCCGATCGTCTCTCTCCAAAGCAAGgtcccatcaa ... gttgattcagATGTTGTCGATGCATAGGAGGTGGCAAGTGTTTAGAGGAGAAAGCTCAGAC
EST: gi|110408472|gb|EC974108.1|EC974108
EST:     GTGTGTTGCTCGACGCCGCTGGCAAGCCGATCGTCTCTCTCCAAAGCAAG                         ATGTTGTCGATGCATAGGAGGTGGCAAGTGTTTAGAGGAGAAAGCTCAGAC
genomic: GTGTGTTGCTCGACGCCGCTGGCAAGCCGATCGTCTCTCTCCAAAGCAAGgtcccatcaa ... gttgattcagATGTTGTCGATGCATAGGAGGTGGCAAGTGTTTAGAGGAGAAAGCTCAGAC
EST: gi|30134700|gb|CB920038.1|CB920038
EST:     GTGTGTTGCTCGACGCCGCTGGCAAGCCGATCGTCTCTCTCCAAAGCAAG                         ATGTTGTCGATGCATAGGAGGTGGCAAGTGTTTAGAGGAGAAAGCTCAGAC
genomic: GTGTGTTGCTCGACGCCGCTGGCAAGCCGATCGTCTCTCTCCAAAGCAAGgtcccatcaa ... gttgattcagATGTTGTCGATGCATAGGAGGTGGCAAGTGTTTAGAGGAGAAAGCTCAGAC
EST: gi|28963752|gb|CB342785.1|CB342785
EST:     GTGTGTTGCTCGACGCCGCTGGCAAGCCGATCGTCTCTCTCCAAAGCAAG                         ATGTTGTCGATGCATAGGAGGTGGCAAGTGTTTAGAGGAGAAAGCTCAGAC
genomic: GTGTGTTGCTCGACGCCGCTGGCAAGCCGATCGTCTCTCTCCAAAGCAAGgtcccatcaa ... gttgattcagATGTTGTCGATGCATAGGAGGTGGCAAGTGTTTAGAGGAGAAAGCTCAGAC
EST: gi|30128344|gb|CB913683.1|CB913683
EST:     GTGTGTTGCTCGACGCCGCTGGCAAGCCGATCGTCTCTCTCCAAAGCAAG                         ATGTTGTCGATGCATAGGAGGTGGCAAGTGTTTAGAGGAGAAAGCTCAGAC
genomic: GTGTGTTGCTCGACGCCGCTGGCAAGCCGATCGTCTCTCTCCAAAGCAAGgtcccatcaa ... gttgattcagATGTTGTCGATGCATAGGAGGTGGCAAGTGTTTAGAGGAGAAAGCTCAGAC
EST: gi|110410220|gb|EC975898.1|EC975898
EST:     GTGTGTTGCTCGACGCCGCTGGCAAGCCGATCGTCTCTCTCCAAAGCAAG                         ATGTTGTCGATGCATAGGAGGTGGCAAGTGTTTAGAGGAGAAAGCTCAGAC
genomic: GTGTGTTGCTCGACGCCGCTGGCAAGCCGATCGTCTCTCTCCAAAGCAAGgtcccatcaa ... gttgattcagATGTTGTCGATGCATAGGAGGTGGCAAGTGTTTAGAGGAGAAAGCTCAGAC
EST: gi|26262446|gb|CA813509.1|CA813509
EST:     GTGTGTTGCTCGACGCCGCTGGCAAGCCGATCGTCTCTCTCCAAAGCAAG                         ATGTTGTCGATGCATAGGAGGTGGCAAGTGTTTAGAGGAGAAAGCTCAGAC
genomic: GTGTGTTGCTCGACGCCGCTGGCAAGCCGATCGTCTCTCTCCAAAGCAAGgtcccatcaa ... gttgattcagATGTTGTCGATGCATAGGAGGTGGCAAGTGTTTAGAGGAGAAAGCTCAGAC
EST: gi|87584146|gb|DY473414.1|DY473414
EST:     GTGTGTTGCTCGACGCCGCTGGCAAGCCGATCGTCTCTCTCTAAAGCAAG                         ATGTTGTCGATGCATAGGAGGTGGCAAGTGTTTAGAGGAGAAAGCTCAGAC
genomic: GTGTGTTGCTCGACGCCGCTGGCAAGCCGATCGTCTCTCTCCAAAGCAAGgtcccatcaa ... gttgattcagATGTTGTCGATGCATAGGAGGTGGCAAGTGTTTAGAGGAGAAAGCTCAGAC
EST: gi|26258010|gb|CA809073.1|CA809073
EST:     GTGTGTTGCTCGACGCCGCTGGCAAGCCGATCGTCTCTCTCCAAAGCAAG                         ATGTTGTCGATGCATAGGAGGTGGCAAGTGTTTAGAGGAGAAAGCTCAGAC
genomic: GTGTGTTGCTCGACGCCGCTGGCAAGCCGATCGTCTCTCTCCAAAGCAAGgtcccatcaa ... gttgattcagATGTTGTCGATGCATAGGAGGTGGCAAGTGTTTAGAGGAGAAAGCTCAGAC
EST: gi|33405576|gb|CF211203.1|CF211203
EST:     GTGTGTTGCTCGACGCCGCTGGCAAGCCGATCGTCTCTCTCCAAAGCAAG                         ATGTTGTCGATGCATAGGAGGTGGCAAGTGTTTAGAGGAGAAAGCTCAGAC
genomic: GTGTGTTGCTCGACGCCGCTGGCAAGCCGATCGTCTCTCTCCAAAGCAAGgtcccatcaa ... gttgattcagATGTTGTCGATGCATAGGAGGTGGCAAGTGTTTAGAGGAGAAAGCTCAGAC
EST: gi|26267482|gb|CA818545.1|CA818545
EST:     GTGTGTTGCTCGACGCCGCTGGCAAGCCGATCGTCTCTCTCCAAAGCAAG                         ATGTTGTCGATGCATAGGAGGTGGCAAGTGTTTAGAGGAGAAAGCTCAGAC
genomic: GTGTGTTGCTCGACGCCGCTGGCAAGCCGATCGTCTCTCTCCAAAGCAAGgtcccatcaa ... gttgattcagATGTTGTCGATGCATAGGAGGTGGCAAGTGTTTAGAGGAGAAAGCTCAGAC
EST: gi|30126270|gb|CB911609.1|CB911609
EST:     GTGTGTTGCTCGACGCCGCTGGCAAGCCGATCGTCTCTCTCCAAAGCAAG                         ATGTTGTCGATGCATAGGAGGTGGCAAGTGTTTAGAGGAGAAAGCTCAGAC
genomic: GTGTGTTGCTCGACGCCGCTGGCAAGCCGATCGTCTCTCTCCAAAGCAAGgtcccatcaa ... gttgattcagATGTTGTCGATGCATAGGAGGTGGCAAGTGTTTAGAGGAGAAAGCTCAGAC
EST: gi|110413305|gb|EC979084.1|EC979084
EST:     GTGTGTTGCTCGACGCCGCTGGCAAGCCGATCGTCTCTCTCCAAAGCAAG                         ATGTTGTCGATGCATAGGAGGTGGCAAGTGTTTAGAGGAGAAAGCTCAGAC
genomic: GTGTGTTGCTCGACGCCGCTGGCAAGCCGATCGTCTCTCTCCAAAGCAAGgtcccatcaa ... gttgattcagATGTTGTCGATGCATAGGAGGTGGCAAGTGTTTAGAGGAGAAAGCTCAGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacattttttctgcaaaatacgtgacggtttgatgttagttactggttgattcagATGTTGTCGATGCATAGGAGGTGGCAAGTGTTTAGAGGAGAAAGCTCAGACCCCAAAGATCTACTGTTCAGTACAAAGCTGTCGTCCATCATTCAATTGA
                                            ggttgat  putative branch site (score: 5)
              aaaata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtcccatcaattatttctttgtttttccttcgtataggaacattttttctgcaaaatacgtgacggtttgatgttagttactggttgattcagATGTTGTCGATGCATAGGAGGTGGCAAGTGTTTAGAGGAGAAAGCTCAGACCCCAAAGATCTACTGTTCAGTACAAAGCTGTCGTCCATCATTCAATTGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG