Sequence
atgc intronic sequence ATGC exonic sequencegtacccttcaacacaatctctaatccagcctcattaactcgctccgttgcgtttctatatttcgtcaccaaaacgagaaagaaggccggaataatcgtcctatttccatgaatgcagAATTATCAAGGCGGTAATCCGGGAGATTTCGTGGTGGACTGGGACTCACCAGCTTCTCAAGATGTGGTTTTGCGGAGGAAGTGCGAGTCGGGTGAAGAGG
Basic information
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33404253|gb|CF209880.1|CF209880EST: AGGTACTCCAATCTGAGATCAGACACGAACAATCCCATGATCGATTTCAG AATTATCAAGGCGGTAATCCGGGAGATTTCGTGGTGGACTGGGACTCACCA
genomic: AGGTACTCCAATCTGAGATCAGACACGAACAATCCCATGATCGATTTCAGgtacccttca ... atgaatgcagAATTATCAAGGCGGTAATCCGGGAGATTTCGTGGTGGACTGGGACTCACCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cgtcaccaaaacgagaaagaaggccggaataatcgtcctatttccatgaatgcagAATTATCAAGGCGGTAATCCGGGAGATTTCGTGGTGGACTGGGACTCACCAGCTTCTCAAGATGTGGTTTTGCGGAGGAAGTGCGAGTCGGGTGAAGAGG
tttccat CT-rich tract
aataat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtacccttcaacacaatctctaatccagcctcattaactcgctccgttgcgtttctatatttcgtcaccaaaacgagaaagaaggccggaataatcgtcctatttccatgaatgcagAATTATCAAGGCGGTAATCCGGGAGATTTCGTGGTGGACTGGGACTCACCAGCTTCTCAAGATGTGGTTTTGCGGAGGAAGTGCGAGTCGGGTGAAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG