Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110719273|gb|EE097058.1|EE097058EST: AACTTCCTTCCCCATTCTCCTCTTTGTTTTGGTCTCTCTCACCGTCACAA ATGGGTCTCAGCTCATACTAGTAAACAACTGCAGGGAAAGCATGTGGCCCG
genomic: AACTTCCTTCCCCATTCTCCTCTTTGTTTTGGTCTCTCTCACCGTCACAAgtacattttc ... tgatatgcagATGGGTCTCAGCTCATACTAGTAAACAACTGCAGGGAAAGCATATGGCCCG
EST:
gi|110386054|gb|EC950626.1|EC950626EST: AACTTCCTTCCCCATTCTCCTCTTTGTTTTGGTCTCTCTCACCGTCACAA ATGGGTCTCAGCTCATACTAGTAAACAACTGCAGGGAAAGCATATGGCCCG
genomic: AACTTCCTTCCCCATTCTCCTCTTTGTTTTGGTCTCTCTCACCGTCACAAgtacattttc ... tgatatgcagATGGGTCTCAGCTCATACTAGTAAACAACTGCAGGGAAAGCATATGGCCCG
EST:
gi|110375817|gb|EC940836.1|EC940836EST: AACTTCCTTCCCCATTCTCCTCTTTGTTTTGGTCTCTCTCACCGTCACAA ATGGGTCTCAGCTCATACTAGTAAACAACTGCAGGGAAAGCATATGGCCCG
genomic: AACTTCCTTCCCCATTCTCCTCTTTGTTTTGGTCTCTCTCACCGTCACAAgtacattttc ... tgatatgcagATGGGTCTCAGCTCATACTAGTAAACAACTGCAGGGAAAGCATATGGCCCG
EST:
gi|33406078|gb|CF211705.1|CF211705EST: AACTTCCTTCCCCATTCTCCTCTTTGTTTTGGTCTCTCTCACCGTCACAA ATGGGTCTCAGCTCATACTAGTAAACAACTGCAGGGAAAGCATATGGCCCG
genomic: AACTTCCTTCCCCATTCTCCTCTTTGTTTTGGTCTCTCTCACCGTCACAAgtacattttc ... tgatatgcagATGGGTCTCAGCTCATACTAGTAAACAACTGCAGGGAAAGCATATGGCCCG
EST:
gi|294964132|gb|GW837935.1|GW837935EST: AACTTCCTTCCCCATTCTCCTCTTTGTTTTGGTCTCTCTCACCGTCACAA ATGGGTCTCAGCTCATACTACTAAACAACTGCAGGGAAAGCATATGGCCCG
genomic: AACTTCCTTCCCCATTCTCCTCTTTGTTTTGGTCTCTCTCACCGTCACAAgtacattttc ... tgatatgcagATGGGTCTCAGCTCATACTAGTAAACAACTGCAGGGAAAGCATATGGCCCG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tagttttcatgtatctgtcatccatcaactgatttctctttttggtgatatgcagATGGGTCTCAGCTCATACTAGTAAACAACTGCAGGGAAAGCATATGGCCCGGAATACTCGGTGGTGCAGGCCACTCCACCCCTAAAGACGGTGGATTCAA
aactgat putative branch site (score: 3)
tttctctttttggt CT-rich tract
tcttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtacattttccttctccttatactctggtagctgttagttttcatgtatctgtcatccatcaactgatttctctttttggtgatatgcagATGGGTCTCAGCTCATACTAGTAAACAACTGCAGGGAAAGCATATGGCCCGGAATACTCGGTGGTGCAGGCCACTCCACCCCTAAAGACGGTGGATTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA