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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgagattttatttttttattttttggctttttggctttgtctcaatctgggtgttgtgggtttttgtgtttgttgtgtgtttgatatgttcatgcttgggatttttctgggaatcccaaaattttccagGAAATCACAAGTGCTGGGGGCAAGACTGTGTGGGGAGACCCTGCAGAAGTTGGGAAGGTTGTGGCGGGGGCGGCATTTGATGTTGTTCTGGATAACAATG

Basic information

species Vitis vinifera
transcript Vv07s0104g00510.t01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110692603|gb|EE072033.1|EE072033
EST:     GTGAGGAGAATTCAGACAAGATGAAGAAGCCTCCATTCAGCCGATTTTCA                         GAAATCACAAGTGCTGGGGGCAAGACTGTGTGGGGAGACCCTGCAGAAGTT
genomic: GTGAGGAGAATTCAGACAAGATGAAGAAGCCTCCATTCAGCCGATTTTCAgttgagattt ... aattttccagGAAATCACAAGTGCTGGGGGCAAGACTGTGTGGGGAGACCCTGCAGAAGTT
EST: gi|32268606|gb|CD717765.1|CD717765
EST:     GTGAGGAGAATTCAGACAAGATGAAGAAGCCTCCATTCAGCCGATTTTCA                         GAAATCACAAGTGCTGGGGGCAAGACTGTGTGGGGAGACCCTGCAGAAGTT
genomic: GTGAGGAGAATTCAGACAAGATGAAGAAGCCTCCATTCAGCCGATTTTCAgttgagattt ... aattttccagGAAATCACAAGTGCTGGGGGCAAGACTGTGTGGGGAGACCCTGCAGAAGTT
EST: gi|29784366|gb|CB344975.2|CB344975
EST:     AAGAAGCCTCCATTCAGCCGATTTTCA                         GAAATCACAAGTGCTGTGTGCAAGACTGTGTGGGGAGACCCTGCAGAAGTT
genomic: AAGAAGCCTCCATTCAGCCGATTTTCAgttgagattt ... aattttccagGAAATCACAAGTGCTGGGGGCAAGACTGTGTGGGGAGACCCTGCAGAAGTT
EST: gi|110703350|gb|EE080117.1|EE080117
EST:     GTGAGGAGAATTCAGACAAGATGAAGAAGCCTCCATTCAGCCGATTTTCA                         GAAATCACAAGTGCTGGGGGCAAGACTGTGTGGGGAGACCCTGCAGAAGTT
genomic: GTGAGGAGAATTCAGACAAGATGAAGAAGCCTCCATTCAGCCGATTTTCAgttgagattt ... aattttccagGAAATCACAAGTGCTGGGGGCAAGACTGTGTGGGGAGACCCTGCAGAAGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgtgtttgatatgttcatgcttgggatttttctgggaatcccaaaattttccagGAAATCACAAGTGCTGGGGGCAAGACTGTGTGGGGAGACCCTGCAGAAGTTGGGAAGGTTGTGGCGGGGGCGGCATTTGATGTTGTTCTGGATAACAATG
    gtttgat  putative branch site (score: 5)
                                               ttttcc  putative PPT
                                           aaaatttt  TA-rich tract