Sequence
atgc intronic sequence ATGC exonic sequence...aacctatgtatgcatgcatgtattcatgtttctcctgcagtttgaaattacactttatctactaacctattgaatgaaaaattccactttggctactcagGTGGAGGCTAAAAGGGCTTTATCAAGAGAAGAACAGCACACCTCCAGACCTGGAAATTCTAATACTGGCAGAAGCTCATCAGGCATGGGAGGAAATTTTA
Basic information
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|351013002|gb|FQ433729.1|FQ433729EST: CCGTTCTCGATGCAGTTCTTCAGGAGAAGCACACCATTGATGGGAGAACG GTGGAGGCTAAAAGGGCTTTATCAAGAGAAGAACAGCACACCTCCAGACCT
genomic: CCGTTCTCGATGCAGTTCTTCAGGAGAAGCACACCATTGATGGGAGAACGgtgagggatt ... ggctactcagGTGGAGGCTAAAAGGGCTTTATCAAGAGAAGAACAGCACACCTCCAGACCT
EST:
gi|71860766|gb|DT009821.1|DT009821EST: CCGTTCTCGATGCAGTTCTTCAGGAGAAGCACACCATTGATGGGAGAACG GTGGAGGCTAAAAGGGCTTTATCAAGAGAAGAACAGCACACCTCCAGACCT
genomic: CCGTTCTCGATGCAGTTCTTCAGGAGAAGCACACCATTGATGGGAGAACGgtgagggatt ... ggctactcagGTGGAGGCTAAAAGGGCTTTATCAAGAGAAGAACAGCACACCTCCAGACCT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aattacactttatctactaacctattgaatgaaaaattccactttggctactcagGTGGAGGCTAAAAGGGCTTTATCAAGAGAAGAACAGCACACCTCCAGACCTGGAAATTCTAATACTGGCAGAAGCTCATCAGGCATGGGAGGAAATTTTA
tactaac putative branch site (score: 0)
tattgaatgaaaaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aacctatgtatgcatgcatgtattcatgtttctcctgcagtttgaaattacactttatctactaacctattgaatgaaaaattccactttggctactcagGTGGAGGCTAAAAGGGCTTTATCAAGAGAAGAACAGCACACCTCCAGACCTGGAAATTCTAATACTGGCAGAAGCTCATCAGGCATGGGAGGAAATTTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- cctatgt
- - - - - -gcatgca
- - - - - - - - - - - -tcatgtt
- - - - - - - - - - - - - - - - tcctgca
- - - - - - - - - - - - - - - - - - - - - -gaaatta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - actaacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgaaaaa