1 5' 3' | 2 5' 3' | 3 5' 3' |
...gcgatattttcggatttactctggggatgcagagtcctaatcctcattgacttttcatgtcaaattcttacgtatcttgttttacaccatgtggtttcagAAGGATGGTTCAGTGAAGCCTCTCATAATCAG
species | Vitis vinifera |
transcript | Vv07s0005g00160.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTTCCTCTCTCCGCAAGAGCAATCCTCCCTGCTCTCCGCAATCGAAAAAG AAGGATGGTTCAGTGAAGCCTCTCATAATCAGEST: gi|161712164|gb|FC061536.1|FC061536
genomic: CTTCCTCTCTCCGCAAGAGCAATCCTCCCTGCTCTCCGCAATCGAAAAAGgtttcctcct ... gtggtttcagAAGGATGGTTCAGTGAAGCCTCTCATAATCAG
EST: CTTCCTCTCTCCGCAAGAGCAATCCTCCCTGCTCTCCGCAATCGAAAAAG AAGGATGGTTCAGTGAAGCCTCTCATAATCAGEST: gi|34544078|gb|CF512310.1|CF512310
genomic: CTTCCTCTCTCCGCAAGAGCAATCCTCCCTGCTCTCCGCAATCGAAAAAGgtttcctcct ... gtggtttcagAAGGATGGTTCAGTGAAGCCTCTCATAATCAG
EST: AATCGAAAAAG AAGGATGGTTCAGTGAAGCCTCTCATAATCAGEST: gi|71871742|gb|DT020797.1|DT020797
genomic: AATCGAAAAAGgtttcctcct ... gtggtttcagAAGGATGGTTCAGTGAAGCCTCTCATAATCAG
EST: CTTCCTCTCTCCGCAAGAGCAATCCTCCCTGCTCTCCGCAATCGAAAAAG AAGGATGGTTCAGTGAAGCCTCTCATAATCAG
genomic: CTTCCTCTCTCCGCAAGAGCAATCCTCCCTGCTCTCCGCAATCGAAAAAGgtttcctcct ... gtggtttcagAAGGATGGTTCAGTGAAGCCTCTCATAATCAG
attgacttttcatgtcaaattcttacgtatcttgttttacaccatgtggtttcagAAGGATGGTTCAGTGAAGCCTCTCATAATCAG
ttcttac putative branch site (score: 2)
aaattctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcgatattttcggatttactctggggatgcagagtcctaatcctcattgacttttcatgtcaaattcttacgtatcttgttttacaccatgtggtttcagAAGGATGGTTCAGTGAAGCCTCTCATAATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - ggatgca
- - - - - - - - - - - - - - - - - - - -atcctca
- - - - - - - - - - - - - - - - - - - - - - - - - - - tcatgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acaccat