Sequence
atgc intronic sequence ATGC exonic sequence...gttccttttttccatatgtcaagcactatattatgtatttccatatgtttccatttttaactgttcatcgttttgataatgcaaaaccctaattctgtagAAATACGTCGCTTTGAAAGTTCAAAAGAGTGCTAAGCATTATACTGAGGCAGCCATGGATGAGATAACCATACTGAAACAGATTGCTGAGGGAGACCCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0061g01050.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA17G05480.1 (Glycine max), 3'ss of exon 1
gttccttttttccatatgtcaagcactatattatgtatttccatatgtttccatttttaactgttcatcgttttgataatgca--aaaccctaattctgtagAAATACGTCGCTTTGAAAGTTCAAAAGAGTGCTAAGCATTATACTGAGGCAGCCATGGATGAGATAACCATACTGAAACAGATTGCTGAGGGAGACCCAG
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gcctatgttattcttcattcttttaataccttgctaacatacatgcgg--caatctttagtttggaactttgttagtgatgttttaaattgtttgtttgcagCGATTTGTTGCCTTAAAAATTCAAAAGAGTGCTCAGCATTACACTGAAGCGGCAATGGATGAAATAAAGATTCTTAAACAAATTGCTGACGGGGATCCAG
upper sequence: Vv06s0061g01050.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA12G30440.1 (Glycine max), 3'ss of exon 1
gttccttttttccatatgtcaagcactatattatgtatttccatatgtttccatttttaactgttcatcgttttgataatgca--aaaccctaattctgtagAAATACGTCGCTTTGAAAGTTCAAAAGAGTGCTAAGCATTATACTGAGGCAGCCATGGATGAGATAACCATACTGAAACAGATTGCTGAGGGAGACCCAG
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gcccatgttatttttcattctttca--ataccatgctaacgtacatgcggcaatctatagtttggaactttgttagtgatgctttaaattgtctgtttgcagCGATATGTTGCCTTAAAAATTCAAAAGAGTGCTCAGCATTACACTGAAGCGGCAATGGATGAAATAAAGATTCTTAAACAAATTGCTGACGGGGATCCAG
upper sequence: Vv06s0061g01050.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT3G44850.1 (Arabidopsis thaliana), 3'ss of exon 1
---gttccttttttccatatgtcaagcactatattatgtatttccatatgtttccatttttaactgttcatcgttttgataatgcaaaaccctaattctgtagAAATACGTCGCTTTGAAAGTTCAAAAGAGTGCTAAGCATTATACTGAGGCAGCCATGGATGAGATAACCATACTGAAACAGATTGCTGAGGGAGACCCAG
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ttgacttgttgtagagaaatgctaaaggttgaatctt-taggcttagatcagtagttctttagtt--tcatgtgtgaagttttgaaagttcttttttgtgtagCGTTATGTAGCTTTGAAAGTTCAGAAGAGTGCTCAACATTATACAGAGGCAGCAATGGATGAGATAAAGATTTTGAAACAGATAGCTGAAGGTGACTCGG
upper sequence: Vv06s0061g01050.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT5G22840.1 (Arabidopsis thaliana), 3'ss of exon 1
-----gttccttttttccatatgtcaagcactatattatgtatttccatatgtttccatttttaactgttcatcgttttgataatgcaaaaccctaattctgtagAAATACGTCGCTTTGAAAGTTCAAAAGAGTGCTAAGCATTATACTGAGGCAGCCATGGATGAGATAACCATACTGAAACAGATTGCTGAGGGAGACCCAG
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attgaattgcattgttgtgattga-actagctttgttagagaatgaggaa-gttcttgtagttagagaattga-atcttgcctttg--aattcatttgtttgtagCGATACGTAGCTTTGAAAATCCAGAAGAGTGCTCAGCACTACACTGAAGCGGCCATGGATGAGATAAAGATATTGAAACAGATTGCAGAAGGCGATGCGGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161712446|gb|FC061751.1|FC061751EST: GTTGGGGACATTTCTCAACCGTGTGGCTCGCTTGGGATACTCAAAAATCC AAATACGTCGCTTTGAAAGTTCAAAAGAGTGCTAAGCATTATACTGAGGCA
genomic: GTTGGGGACATTTCTCAACCGTGTGGCTCGCTTGGGATACTCAAAAATCCgtatgtttct ... aattctgtagAAATACGTCGCTTTGAAAGTTCAAAAGAGTGCTAAGCATTATACTGAGGCA
EST:
gi|161713070|gb|FC062151.1|FC062151EST: GTTGGGGACATTTCTCAACCGTGTGGCTCGCTTGGGATACTCAAAAATCC AAATACGTCGCTTTGAAAGTTCAAAAGAGTGCTAAGCATTATACTGAGGCA
genomic: GTTGGGGACATTTCTCAACCGTGTGGCTCGCTTGGGATACTCAAAAATCCgtatgtttct ... aattctgtagAAATACGTCGCTTTGAAAGTTCAAAAGAGTGCTAAGCATTATACTGAGGCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgtttccatttttaactgttcatcgttttgataatgcaaaaccctaattctgtagAAATACGTCGCTTTGAAAGTTCAAAAGAGTGCTAAGCATTATACTGAGGCAGCCATGGATGAGATAACCATACTGAAACAGATTGCTGAGGGAGACCCAG
atttttaact TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttccttttttccatatgtcaagcactatattatgtatttccatatgtttccatttttaactgttcatcgttttgataatgcaaaaccctaattctgtagAAATACGTCGCTTTGAAAGTTCAAAAGAGTGCTAAGCATTATACTGAGGCAGCCATGGATGAGATAACCATACTGAAACAGATTGCTGAGGGAGACCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - -ccatatg
- - - - - - - - - tcaagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaaacc