Sequence
atgc intronic sequence ATGC exonic sequence...ctaccatcaattcaggtccttaaaatattctactaataattcagttttctttcgatttcaatgacgatttagtgttaattcatatttctttggatttcagTGATGGGAAAAATTACAACAAAAGCTGATGTCTTCAGCTATGGAGTGGTGTTGATGGAACTTTTGACTGGATTAGCGGCACTTGATGAGGGGCGTTCTGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0009g00580.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA12G31360.1 (Glycine max), 3'ss of exon 4
ctaccatcaattcaggtcctta-aaatat----tctactaataattcagttttct---ttcgatttcaatgacgatttagtgttaattcatatttctttggatttcagTGATGGGAAAAATTACAACAAAAGCTGATGTCTTCAGCTATGGAGTGGTGTTGATGGAACTTTTGACTGGATTAGCGGCACTTGATGAGGGGCGTTCTGA
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------ggagttcagaccataggaaatatatgatgtcttatcatcttagtattctcagtttgatgcgcctagctttgca-tactaattaa-gtttccgtgtgtttcagTGATGGGGAAAATCACCACAAAAGTTGATGTGTTCAGCTACGGTGTGGTGTTGATGGAACTTCTGACTGGACTTGTGGCACTTGACGAGAGTCGGCCAGA
upper sequence: Vv06s0009g00580.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA12G09960.1 (Glycine max), 3'ss of exon 6
---ctaccatcaattcaggtccttaaaatattctactaataattcagttttctttcgatttcaatgacgatttagtgttaattcatatttctttggatttcagTGATGGGAAAAATTACAACAAAAGCTGATGTCTTCAGCTATGGAGTGGTGTTGATGGAACTTTTGACTGGATTAGCGGCACTTGATGAGGGGCGTTCTGA
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taaatgtgattgaattgaatctcta---cacttgttgaacctctcaggtgtaagtttgatgcatctagcttcacacactaatataagcttttgtgagttgcagTGATGGGGAAAATCACCACTAAAGTTGACGTTTTCAGCTACGGTGTGGTCTTGATGGAACTTCTGACTGGACTAATGGCTCTTGACGAGAGCCGGTCGGA
upper sequence: Vv06s0009g00580.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA11G18310.1 (Glycine max), 3'ss of exon 4
---ctaccatcaattcaggtccttaaaatattctactaataattcagttttctttcgatttcaatgacgatttagtgttaattcatatttctttggatttcagTGATGGGAAAAATTACAACAAAAGCTGATGTCTTCAGCTATGGAGTGGTGTTGATGGAACTTTTGACTGGATTAGCGGCACTTGATGAGGGGCGTTCTGA
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taaatgtgattgaattgaatctctacacttgttga--acttctctggtataagtttgatgcatctagcttccca-cactaacataagcttctgtgagttgcagTGATGGGGAAAATCACCACTAAAGTTGACGTTTTCAGCTACGGTGTGGTCTTGATGGAACTTCTGACCGGACTAATGGCTCTTGACGAGAGACGGTCAGA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttctttcgatttcaatgacgatttagtgttaattcatatttctttggatttcagTGATGGGAAAAATTACAACAAAAGCTGATGTCTTCAGCTATGGAGTGGTGTTGATGGAACTTTTGACTGGATTAGCGGCACTTGATGAGGGGCGTTCTGA
tgttaat putative branch site (score: 3)
tatttcttt putative PPT
atttagtgttaattca TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ctaccatcaattcaggtccttaaaatattctactaataattcagttttctttcgatttcaatgacgatttagtgttaattcatatttctttggatttcagTGATGGGAAAAATTACAACAAAAGCTGATGTCTTCAGCTATGGAGTGGTGTTGATGGAACTTTTGACTGGATTAGCGGCACTTGATGAGGGGCGTTCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- -ccatcaa
- - - - - - caggtcc
- - - - - - - - - - -aaaatat