1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaattctctcctcttagatcagtatctccattttttcccttgattctagggttttgttcttgattgtactggttttgcagGAAAGCGAAGCTTTACAGATTCGACAAGGATGGGAATCAATGGAAGGAGAGAGGTGCTGGTAGTGTGAAGCTTTTGAAGCACAAAGAATCTGGCAAGGTC
species | Vitis vinifera |
transcript | Vv06s0004g06880.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAGGTTGCCGTCACCACCGGCGAGGAGGATGAAGACGCCATTCTCGATCT GAAAGCGAAGCTTTACAGATTCGACAAGGATGGGAATCAATGGAAGGAGAGEST: gi|110710444|gb|EE086786.1|EE086786
genomic: GAGGTTGCCGTCACCACCGGCGAGGAGGATGAAGACGCCGTTCTCGATCTgtaattctct ... ggttttgcagGAAAGCGAAGCTTTACAGATTCGACAAGGATGGGAATCAATGGAAGGAGAG
EST: GAGGTTGCCGTCACCACCGGCGAGGAGGATGAAGACGCCATTCTCGATCT GAAAGCGAAGCTTTACAGATTCGACAAGGATGGGAATCAATGGAAGGAGAGEST: gi|161707126|gb|FC056389.1|FC056389
genomic: GAGGTTGCCGTCACCACCGGCGAGGAGGATGAAGACGCCGTTCTCGATCTgtaattctct ... ggttttgcagGAAAGCGAAGCTTTACAGATTCGACAAGGATGGGAATCAATGGAAGGAGAG
EST: GAGGTTGCCGTCACCACCGGCGAGGAGGATGAAGACGCCATTCTCGATCT GAAAGCGAAGCTTTACAGATTCGACAAGGATGGGAATCAATGGAAGGAGAGEST: gi|110686104|gb|EE063409.1|EE063409
genomic: GAGGTTGCCGTCACCACCGGCGAGGAGGATGAAGACGCCGTTCTCGATCTgtaattctct ... ggttttgcagGAAAGCGAAGCTTTACAGATTCGACAAGGATGGGAATCAATGGAAGGAGAG
EST: GAGGTTGCCGTCACCACCGGCGAGGAGGATGAAGACGCCATTCTCGATCT GAAAGCGAAGCTTTACAGATTCGACAAGGATGGGAATCAATGGAAGGAGAGEST: gi|110689315|gb|EE065434.1|EE065434
genomic: GAGGTTGCCGTCACCACCGGCGAGGAGGATGAAGACGCCGTTCTCGATCTgtaattctct ... ggttttgcagGAAAGCGAAGCTTTACAGATTCGACAAGGATGGGAATCAATGGAAGGAGAG
EST: GAGGTTGCCGTCACCACCGGCGAGGAGGATGAAGACGCCATTCTCGATCT GAAAGCGAAGCTTTACAGATTCGACAAGGATGGGAATCAATGGAAGGAGAGEST: gi|37183761|gb|CF603115.1|CF603115
genomic: GAGGTTGCCGTCACCACCGGCGAGGAGGATGAAGACGCCGTTCTCGATCTgtaattctct ... ggttttgcagGAAAGCGAAGCTTTACAGATTCGACAAGGATGGGAATCAATGGAAGGAGAG
EST: GAGGTTGCCGTCACCACCGGCGAGGAGGATGAAGACGCCATTCTCGATCT GAAAGCGAAGCTTTACAGATTCGACAAGGATGGGAATCAATGGAAGGAGAGEST: gi|294966177|gb|GW839400.1|GW839400
genomic: GAGGTTGCCGTCACCACCGGCGAGGAGGATGAAGACGCCGTTCTCGATCTgtaattctct ... ggttttgcagGAAAGCGAAGCTTTACAGATTCGACAAGGATGGGAATCAATGGAAGGAGAG
EST: GAGGTTGCCGTCACCACCGGCGAGGAGGATGAAGACGCCATTCTCGATCT GAAAGCGAAGCTTTACAGATTCGACAAGGATGGGAATCAATGGAAGGAGAGEST: gi|37184112|gb|CF603466.1|CF603466
genomic: GAGGTTGCCGTCACCACCGGCGAGGAGGATGAAGACGCCGTTCTCGATCTgtaattctct ... ggttttgcagGAAAGCGAAGCTTTACAGATTCGACAAGGATGGGAATCAATGGAAGGAGAG
EST: GAGGTTGCCGTCACCACCGGCGAGGAGGATGAAGACGCCGTTCTCGATCT GAAAGCGAAGCTTTACAGATTCGACAAGGATGGGAATCAATGGAAGGAGAGEST: gi|110723271|gb|EE100389.1|EE100389
genomic: GAGGTTGCCGTCACCACCGGCGAGGAGGATGAAGACGCCGTTCTCGATCTgtaattctct ... ggttttgcagGAAAGCGAAGCTTTACAGATTCGACAAGGATGGGAATCAATGGAAGGAGAG
EST: GAGGTTGCCGTCACCACCGGCGAGGAGGATGAAGACGCCATTCTCGATCT GAAAGCGAAGCTTTACAGATTCGACAAGGATGGGAATCAATGGAAGGAGAGEST: gi|110724975|gb|EE101275.1|EE101275
genomic: GAGGTTGCCGTCACCACCGGCGAGGAGGATGAAGACGCCGTTCTCGATCTgtaattctct ... ggttttgcagGAAAGCGAAGCTTTACAGATTCGACAAGGATGGGAATCAATGGAAGGAGAG
EST: GAGGTTGCCGTCACCACCGGCGAGGAGGATGAAGACGCCATTCTCGATCT GAAAGCGAAGCTTTACAGATTCGACAAGGATGGGAATCAATGGAAGGAGAGEST: gi|110726623|gb|EE102567.1|EE102567
genomic: GAGGTTGCCGTCACCACCGGCGAGGAGGATGAAGACGCCGTTCTCGATCTgtaattctct ... ggttttgcagGAAAGCGAAGCTTTACAGATTCGACAAGGATGGGAATCAATGGAAGGAGAG
EST: GAGGTTGCCGTCACCACCGGCGAGGAGGATGAAGACGCCATTCTCGATCT GAAAGCGAAGCTTTACAGATTCGACAAGGATGGGAATCAATGGAAGGAGAGEST: gi|161709260|gb|FC057984.1|FC057984
genomic: GAGGTTGCCGTCACCACCGGCGAGGAGGATGAAGACGCCGTTCTCGATCTgtaattctct ... ggttttgcagGAAAGCGAAGCTTTACAGATTCGACAAGGATGGGAATCAATGGAAGGAGAG
EST: GAGGTTGCCGTCACCACCGGCGAGGAGGATGAAGACGCCATTCTCGATCT GAAAGCGAAGCTTTACAGATTCGACAAGGATGGGAATCAATGGAAGGAGAGEST: gi|110732314|gb|EE107490.1|EE107490
genomic: GAGGTTGCCGTCACCACCGGCGAGGAGGATGAAGACGCCGTTCTCGATCTgtaattctct ... ggttttgcagGAAAGCGAAGCTTTACAGATTCGACAAGGATGGGAATCAATGGAAGGAGAG
EST: GAGGTTGCCGTCACCACCGGCGAGGAGGATGAAGACGCCATTCTCGATCT GAAAGCGAAGCTTTACAGATTCGACAAGGATGGGAATCAATGGAAGGAGAGEST: gi|110687654|gb|EE065310.1|EE065310
genomic: GAGGTTGCCGTCACCACCGGCGAGGAGGATGAAGACGCCGTTCTCGATCTgtaattctct ... ggttttgcagGAAAGCGAAGCTTTACAGATTCGACAAGGATGGGAATCAATGGAAGGAGAG
EST: CGCCATTCTCGATCT GAAAGCGAAGCTTTACAGATTCGACAAGGATGGGAATCAATGGAAGGAGAGEST: gi|110687655|gb|EE065311.1|EE065311
genomic: CGCCGTTCTCGATCTgtaattctct ... ggttttgcagGAAAGCGAAGCTTTACAGATTCGACAAGGATGGGAATCAATGGAAGGAGAG
EST: CGCCATTCTCGATCT GAAAGCGAAGCTTTACAGATTCGACAAGGATGGGAATCAATGGAAGGAGAGEST: gi|110372303|gb|EC936456.1|EC936456
genomic: CGCCGTTCTCGATCTgtaattctct ... ggttttgcagGAAAGCGAAGCTTTACAGATTCGACAAGGATGGGAATCAATGGAAGGAGAG
EST: GAGGTTGCCGTCACCACCGGCGAGGAGGATGAAGACGCCATTCTCGATCT GAAAGCGAAGCTTTACAGATTCGACAAGGATGGGAATCAATGGAAGGAGAGEST: gi|110721265|gb|EE098063.1|EE098063
genomic: GAGGTTGCCGTCACCACCGGCGAGGAGGATGAAGACGCCGTTCTCGATCTgtaattctct ... ggttttgcagGAAAGCGAAGCTTTACAGATTCGACAAGGATGGGAATCAATGGAAGGAGAG
EST: GAGGTTGCCGTCACCACCGGCGAGGAGGATGAAGACGCCATTCTCGATCT GAAAGCGAAGCTTTACAGATTCGACAAGGATGGGAATCAATGGAAGGAGAG
genomic: GAGGTTGCCGTCACCACCGGCGAGGAGGATGAAGACGCCGTTCTCGATCTgtaattctct ... ggttttgcagGAAAGCGAAGCTTTACAGATTCGACAAGGATGGGAATCAATGGAAGGAGAG
ctccattttttcccttgattctagggttttgttcttgattgtactggttttgcagGAAAGCGAAGCTTTACAGATTCGACAAGGATGGGAATCAATGGAAGGAGAGAGGTGCTGGTAGTGTGAAGCTTTTGAAGCACAAAGAATCTGGCAAGGTC
tcttgat putative branch site (score: 4)
tttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattctctcctcttagatcagtatctccattttttcccttgattctagggttttgttcttgattgtactggttttgcagGAAAGCGAAGCTTTACAGATTCGACAAGGATGGGAATCAATGGAAGGAGAGAGGTGCTGGTAGTGTGAAGCTTTTGAAGCACAAAGAATCTGGCAAGGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA