Sequence
atgc intronic sequence ATGC exonic sequence...tatctcactgtttgatgcttatcttttgtagaattacagtcaatcatatgcatcttaattccctttgttaaatcttcgacattttgtgtggtttttgcagGTGTGCGATGAGCTCGAGGATTTGATGGAAGAAGGGGGAAACATTGTGGACTACCATGGTTGTGATTTCTTCCCTGAGCGATGGTTTGATCGTGTGGTGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g03280.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA16G27430.1 (Glycine max), 3'ss of exon 2
---tatctcactgtttgatgcttatcttttgtagaattacagtcaatcatatgcatcttaattccctttgttaaatcttcgac-attttgtgtggtttttgcagGTGTGCGATGAGCTCGAGGATTTGATGGAAGAAGGGGGAAACATTGTGGACTACCATGGTTGTGATTTCTTCCCTGAGCGATGGTTTGATCGTGTGGTGG
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tttaatattaatatt--atcctcatcattgatacttttcttgtca-tcatgtgtatgttgcctga-tttataggttttatgtctattttgcatggtttttgtagGTTTGTGATGAACTTGAGGATGTTATGGAAGAGGGGGGAAACATTGTGGACTACCATGGCTGTGATTTCTTTCCTGAGCGTTGGTTTGATTGCGTGGTTG
upper sequence: Vv06s0004g03280.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA02G08350.1 (Glycine max), 3'ss of exon 2
tatctcactgtttgatgcttatcttttgtagaattacagtcaatc---atatgcatcttaattccctttgttaaatcttcga---cattttgtgtggtttttgcagGTGTGCGATGAGCTCGAGGATTTGATGGAAGAAGGGGGAAACATTGTGGACTACCATGGTTGTGATTTCTTCCCTGAGCGATGGTTTGATCGTGTGGTGG
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---tttgatatt--atcctcatcattgacacatttcttgtcatcttgtgtgtgctgcctgatata-taggtttattttacgagtttaatttgcatggtttctgtagGTCTGTGATGAACTTGAGGATGTTATGGAAGAGGGGGGAAACATTGTGGACTACCATGGCTGTGATTTCTTTCCCGAGCGTTGGTTTGATTGCGTGGTTG
upper sequence: Vv06s0004g03280.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA10G33100.1 (Glycine max), 3'ss of exon 2
tatctcactgtttgatgcttatcttttgtagaattacagtcaatcatatg-catcttaattccctttgttaaatcttcgacattttgtgtggtttttgcagGTGTGCGATGAGCTCGAGGATTTGATGGAAGAAGGGGGAAACATTGTGGACTACCATGGTTGTGATTTCTTCCCTGAGCGATGGTTTGATCGTGTGGTGG
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ggttacatgaaataattttaatattatcctcatcattgacacatttcttgtcatcatgtttatgtttcctgatttattggctttacaacta-tatctgtagGTCTGTGATGAACTTGAGGATGTTATGGAAGCGGGGGGAAACATTGTGGACTACCATGGCTGCGTTTTCTTTCCTGAGCGATGGTTTAATTGTGTGGTTG
upper sequence: Vv06s0004g03280.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT5G60340.1 (Arabidopsis thaliana), 3'ss of exon 1
--------------------------------------tatctcactgtttg----atgctt---atcttttgtagaattacag---tcaatc---------atatgcatcttaattccctttgttaaat-------cttcgacattttgtgtggtttttg-----cagGTGTGCGATGAGCTCGAGGATTTGATGGAAGAAGGGGGAAACATTGTGGACTACCATGGTTGTGATTTCTTCCCTGAGCGATGGTTTGATCGTGTGGTGG
||| || ||| | ||| | | || |||||| | ||| || ||| || | |||| || | ||| ||| | || |||| | | ||| |||||| |||||||| || ||| ||| |||||| || |||||||||||||||||||| ||||| ||||| ||| |||||||||||||||| || || |
gttagtttcttactccatccctatccctttatcctccttatttccttgtcaacaaaacactttgaaccgttgctagaatcttaagcttcactctttagtttgataaagatttggattcaattcgaagaattagccttcttagctatattgtattgaacttgtggatcagGTGATTGATGAGCTTGACGATGCTATGATAGAAGGAGGGAACATTGTGGACTACCATGGCTGTGACTTCTTTCCTCAGCGATGGTTTGATCGCGTTGTCGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|77577867|gb|DV217683.1|DV217683EST: ACGACGGATGGGACGACCAGTTCGACTGCCACATCATCAACGAGGACCTG GTGTGCGATGAGCTCGAGGATTTGATGGAAGAAGGGGGAAACATTGTGGAC
genomic: ACGACGGATGGGACGACCAGTTCGACTGCCACATCATCAACGAGGACCTGgtacccttac ... gtttttgcagGTGTGCGATGAGCTCGAGGATTTGATGGAAGAAGGGGGAAACATTGTGGAC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atatgcatcttaattccctttgttaaatcttcgacattttgtgtggtttttgcagGTGTGCGATGAGCTCGAGGATTTGATGGAAGAAGGGGGAAACATTGTGGACTACCATGGTTGTGATTTCTTCCCTGAGCGATGGTTTGATCGTGTGGTGG
tcttaat putative branch site (score: 3)
tttttgc putative PPT
tttgttaaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tatctcactgtttgatgcttatcttttgtagaattacagtcaatcatatgcatcttaattccctttgttaaatcttcgacattttgtgtggtttttgcagGTGTGCGATGAGCTCGAGGATTTGATGGAAGAAGGGGGAAACATTGTGGACTACCATGGTTGTGATTTCTTCCCTGAGCGATGGTTTGATCGTGTGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- -ctcactg
- - - - - - tgatgct
- - - - - - - - - - - - - - - - - - - - - - catatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgtgtg