Sequence
atgc intronic sequence ATGC exonic sequencegtaagcctacttatctactcacttaatgatgttcttccagccctacaagtactcatgtcccatataccaaaaaccatttcctatttctctgtgtttgacattacgaatccatgcctttttgcagATAGAAAAGCAAAATGTACTGGATACGGCTCTCTCTGTTATGACCCTCGATTCATTGGGGGTGATGGAGTGATGTTCTACTTCCATGGCGCAAAGGGAGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g03010.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA11G20700.1 (Glycine max), 3'ss of exon 1
gtaagcctacttatctactcacttaatgatgttcttccagccctacaagtactcatgtcccatataccaaaaaccatttcctatttctctgtgtttgacattacgaatccatgcct-ttttgcagATAGAAAAGCAAAATGTACTGGATACGGCTCTCTCTGTTATGACCCTCGATTCATTGGGGGTGATGGAGTGATGTTCTACTTCCATGGCGCAAAGGGAGG
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------------------tgatcggttgacttttttaaaaa--tacatcttctgatttttgattggttgaggagtgagagatgaac-----tagctgatgttgagtttgtttgtttgtttggcagTTAGAAAAGCCAACTGTGATGGATATGGTGCTTTGTGTTATGATCCTCGCTTTGTTGGTGGTGATGGAGTGATGTTCTACTTCCACGGTGCCAAAGGAGG
upper sequence: Vv06s0004g03010.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA12G07360.1 (Glycine max), 3'ss of exon 3
gtaagcctacttatctactcacttaatgatgttcttccagccctacaagtactcatgtcccatataccaaaaaccatttcctatttctctgtgtttga---cattacgaatccatgcctttttgcagATAGAAAAGCAAAATGTACTGGATACGGCTCTCTCTGTTATGACCCTCGATTCATTGGGGGTGATGGAGTGATGTTCTACTTCCATGGCGCAAAGGGAGG
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----------------------gtaaag-tgtttttacactctctaaattaaatgtattg---atagtgtaaagtgttttaaattaaattggactggaactcatttttagttagt-ttgtttgacagTTAGGAAAGCCAACAGCGATGGGTATGGATCTCTGTGTTATGATCCTCGCTTCGTTGGTGGTGATGGTGTTATGTTCTACTTCCACGGAGCCAAAGGAGGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122690006|gb|EC939236.1|EC939236EST: GAAGGGTTGCTTCATTGACTGCGGTAGCAAGTGTGAAGTTACTTGCAAGT ATAGAAAAGCAAAATGTACTGGATACGGCTCTCTCTGTTATGACCCTCGAT
genomic: GAAGGGTTGCTTCATTGACTGCGGTAGCAAGTGTGAAGTTACTTGCAAGTgtaagcctac ... ctttttgcagATAGAAAAGCAAAATGTACTGGATACGGCTCTCTCTGTTATGACCCTCGAT
EST:
gi|161706804|gb|FC057606.1|FC057606EST: GAAGGGTTGCTTCATTGACTGCGGTAGCAATTGTGAAGTTACTTGCAAGT ATAGAAAAGCAAAATGTACTGGATACGGCTCTCTCTGTTATGACCCTCGAT
genomic: GAAGGGTTGCTTCATTGACTGCGGTAGCAAGTGTGAAGTTACTTGCAAGTgtaagcctac ... ctttttgcagATAGAAAAGCAAAATGTACTGGATACGGCTCTCTCTGTTATGACCCTCGAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaaaccatttcctatttctctgtgtttgacattacgaatccatgcctttttgcagATAGAAAAGCAAAATGTACTGGATACGGCTCTCTCTGTTATGACCCTCGATTCATTGGGGGTGATGGAGTGATGTTCTACTTCCATGGCGCAAAGGGAGG
gtttgac putative branch site (score: 4)
tgccttttt putative PPT
tatttct TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagcctacttatctactcacttaatgatgttcttccagccctacaagtactcatgtcccatataccaaaaaccatttcctatttctctgtgtttgacattacgaatccatgcctttttgcagATAGAAAAGCAAAATGTACTGGATACGGCTCTCTCTGTTATGACCCTCGATTCATTGGGGGTGATGGAGTGATGTTCTACTTCCATGGCGCAAAGGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG