1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaaagtgcaatctcgctcgtttgtctcgttctctacgttggtgattttttattttttatttatttttgttttgagatttttgattcgatttggtttcttttggtggtagCTCGGCTCTGAATTCGGAGACGAACGAGCACGTGGCGCTAAAGAAAATAGCGAATGCATTCGATAACAAAATCGATGCGAAGAGGACGCTTCGGGAGATC
species | Vitis vinifera |
transcript | Vv05s0094g00900.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TACAAGCCTCCAATCATGCCCATAGGGAAGGGCGCTTACGGCATCGTGTG CTCGGCTCTGAATTCGGAGACGAACGAGCACGTGGCGCTAAAGAAAATAGCEST: gi|161714347|gb|FC062648.1|FC062648
genomic: TACAAGCCTCCAATCATGCCCATAGGGAAGGGCGCTTACGGCATCGTGTGgtaaagtgca ... ttggtggtagCTCGGCTCTGAATTCGGAGACGAACGAGCACGTGGCGCTAAAGAAAATAGC
EST: TACAAGCCTCCAATCATGCCCATAGGGAAGGGCGCTTACGGCATCGTGTG CTCGGCTCTGAATTCGGAGACGAACGAGCACGTGGCGCTAAAGAAAATAGCEST: gi|161717362|gb|FC065277.1|FC065277
genomic: TACAAGCCTCCAATCATGCCCATAGGGAAGGGCGCTTACGGCATCGTGTGgtaaagtgca ... ttggtggtagCTCGGCTCTGAATTCGGAGACGAACGAGCACGTGGCGCTAAAGAAAATAGC
EST: TACAAGCCTCCAATCATGCCCATAGGGAAGGGCGCTTACGGCATCGTGTG CTCGGCTCTGAATTCGGAGACGAACGAGCACGTGGCGCTAAAGAAAATAGCEST: gi|161716253|gb|FC068076.1|FC068076
genomic: TACAAGCCTCCAATCATGCCCATAGGGAAGGGCGCTTACGGCATCGTGTGgtaaagtgca ... ttggtggtagCTCGGCTCTGAATTCGGAGACGAACGAGCACGTGGCGCTAAAGAAAATAGC
EST: TACAAGCCTCCAATCATGCCCATAGGGAAGGGCGCTTACGGCATCGTGTG CTCGGCTCTGAATTCGGAGACGAACGAGCACGTGGCGCTAAAGAAAATAGCEST: gi|110713988|gb|EE090389.1|EE090389
genomic: TACAAGCCTCCAATCATGCCCATAGGGAAGGGCGCTTACGGCATCGTGTGgtaaagtgca ... ttggtggtagCTCGGCTCTGAATTCGGAGACGAACGAGCACGTGGCGCTAAAGAAAATAGC
EST: TACAAGCCTCCAATCATGCCCATAGGGAAGGGCGCTTACGGCATCGTGTG CTCGGCTCTGAATTCGGAGACGAACGAGCACGTGGCGCTAAAGAAAATAGC
genomic: TACAAGCCTCCAATCATGCCCATAGGGAAGGGCGCTTACGGCATCGTGTGgtaaagtgca ... ttggtggtagCTCGGCTCTGAATTCGGAGACGAACGAGCACGTGGCGCTAAAGAAAATAGC
tttatttatttttgttttgagatttttgattcgatttggtttcttttggtggtagCTCGGCTCTGAATTCGGAGACGAACGAGCACGTGGCGCTAAAGAAAATAGCGAATGCATTCGATAACAAAATCGATGCGAAGAGGACGCTTCGGGAGATC
ttttgat putative branch site (score: 4)
tttctttt putative PPT
ttatttttgttttgag TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaagtgcaatctcgctcgtttgtctcgttctctacgttggtgattttttattttttatttatttttgttttgagatttttgattcgatttggtttcttttggtggtagCTCGGCTCTGAATTCGGAGACGAACGAGCACGTGGCGCTAAAGAAAATAGCGAATGCATTCGATAACAAAATCGATGCGAAGAGGACGCTTCGGGAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC