Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcggtaacacgcgtgttcatagtttttctgttggtcgtgtattgtatgacgaggaaaaggaggagatttttggagtttttgtgagtgggtgtgtggtggggattgtggtgggtttggatgattgattgatggagtatcgggaggtttttgatggttttattttttatttttgggtgcagGGAGGGTGAATTTGATAGGAGAGCACATTGATTATGAAGGCTATTCGGTGTTGCCGATGGCAATACGGCAGGACACGATCGTGGCGATTCGGAAGCATGA

Basic information

species Vitis vinifera
transcript Vv05s0077g00690.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0077g00690.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: LOC_Os03g61710.1 (Oryza sativa), 3'ss of exon 1
gtcggtaacacgcgtgttcatagtttttctgttggtcgtgtattgtatgacgaggaaaaggaggagatttttggagtttttgtgagtgggtgtgtgg-tggggattgtggtgggtttggatgattg--attgatggagtatcgggaggtttttgatggttttattttttatttttgggtgcagGGAGGGTGAATTTGATAGGAGAGCACATTGATTATGAAGGCTATTCGGTGTTGCCGATGGCAATACGGCAGGACACGATCGTGGCGATTCGGAAGCATGA
                                                                                 ||  || | |   ||| |||| |      | ||||| | ||  ||   |||||    | |    |||      |||| ||   | |   | | || |||||||| |||||||| ||||||| |||||||| || || || || || ||||||||||| ||||| || |||||||||| |||||| || ||  ||| |   ||
---------------------------------------------------------------------------------gtaggttgatagatggatgggtaccactctaggtttcggtggatgcgtttgatttgatctgacaagg------atggattgcgtgtgcgtgtgtgtgtgcagGGCGGGTGAATCTGATAGGGGAGCACATCGACTACGAGGGGTACTCGGTGTTGCCCATGGCCATCCGGCAGGACATGATCGTCGCCATCAGGAGGGCAGA

upper sequence: Vv05s0077g00690.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G458549_T02 (Zea mays), 3'ss of exon 1
gtcggtaacacgcgtgttcatagtttttctgttggtcgtgtattgtatgacgaggaaaaggaggagatttttggagtttttgtgagtgggtgtgtggtggggattgtggtgggtttggatga-ttgattgatggagtatcgggaggtttttgatggttttattttttatttttgggtgcagGGAGGGTGAATTTGATAGGAGAGCACATTGATTATGAAGGCTATTCGGTGTTGCCGATGGCAATACGGCAGGACACGATCGTGGCGATTCGGAAGCATGA
                                                                                |  |   |  |  ||     ||| || | || || ||  |||  |||  |   |||| |  |   |     |  ||          |   | | | |||||||||||| ||| |||| || |||||||| || || || ||||| ||||||||||||||||| || || ||||||| |||||| || || || | |    |
-------------------------------------------------------------------------------gtccgtccgcctccgtcccctggactgcg-tgtgtgtgcttgagctga--ggctgagtctgagtctggccccgccggcgccgcgggctggctgttgctgcagGGAGGGTCAATCTGATCGGGGAGCACATCGACTACGAGGGCTACTCGGTGTTGCCGATGGCCATCCGCCAGGACATGATCGTCGCCATCCGAAGGGCCAA

upper sequence: Vv05s0077g00690.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA17G03990.1 (Glycine max), 3'ss of exon 1
gtcggtaacacgcgtgttcatagtttttctgttggtcgtgtattgtatgacgaggaaaaggaggagatttttggagtttttgtgagtgggtgtgtggtggggattgtggtgggtttggatgattgattgatggagtatcgggaggtttttgatggttttattttttatttttgggtgcagGGAGGGTGAATTTGATAGGAGAGCACATTGATTATGAAGGCTATTCGGTGTTGCCGATGGCAATACGGCAGGACACGATCGTGGCGATTCGGAAGCATGA
                              |||  ||      | | | |                |||| |  | ||| | |   |   | | |  |    |||||  |  ||||  |||||       | || ||| | |  ||||   | | ||  |||||   || |  |||||||| || ||||| ||||| || |||||||||||||||||||| ||||||||| |||| |||||||| ||||| |||||||||||||||||||||||  ||||
------------------------------gttcttctctctctctctca----------------atttctaaattttctatttctttttctctctta---attgt--ttagtttttatgataagagattagaatattgcggtgtttc--acgatt--attttggtttctgcggtgcagGAAGAGTGAACTTGATTGGGGAGCACATTGATTATGAAGGTTATTCGGTGCTGCCTATGGCAATTCGGCAAGACACGATCGTGGCGATTCGGAAAAATGA

upper sequence: Vv05s0077g00690.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA07G36610.1 (Glycine max), 3'ss of exon 1
gtcggtaacacgcgtgttcatagtttttctgttggtcgtgtattgtatgacgaggaaaaggaggagatttttggagtttttgtgagtgggtgtgtggtggggattgtggtgggtttggatgattgattgatggagtatcgggaggtttttgatggttttattttttatttttgggtgcagGGAGGGTGAATTTGATAGGAGAGCACATTGATTATGAAGGCTATTCGGTGTTGCCGATGGCAATACGGCAGGACACGATCGTGGCGATTCGGAAGCATGA
                      |||  ||| |   ||      | | |  |   |||          ||| |  | | | | |   |  || |         |||||      ||  ||| ||       | || ||| | |  ||||   |||  | |   |||  ||||  ||||||||||| ||||| ||||| || ||||| |||||||||||||| ||||||||| |||| |||||||| ||||| || ||||||||||||||||||||  ||||
----------------------gttcctctctctctctctctctctctctctctgaa----------tttgtaaaatctgtat---ttcgttttctcccttaattgttagtttttatgataataagagattagaatattgcggtgtttc--atgaatat---tttggttttgcggtgcagGGAGAGTGAACTTGATTGGGGAGCATATTGATTATGAAGGTTATTCGGTGCTGCCTATGGCAATTCGGCAAGATACGATCGTGGCGATTCGGAAAAATGA

upper sequence: Vv05s0077g00690.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT3G06580.1 (Arabidopsis thaliana), 3'ss of exon 1
gtcggtaa-cacgcgtgttcatagtttttctgttggtcgtgtattgtatgacgaggaaaaggaggagatttttggagtttttgtgagtgggtgtgtggtggggatt---gtggtgggtttggatgatt----------gattgatgga---gtatcgggaggtttttgatggttttattttttat-ttttgggtgcagGGAGGGTGAATTTGATAGGAGAGCACATTGATTATGAAGGCTATTCGGTGTTGCCGATGGCAATACGGCAGGACACGATCGTGGCGATTCGGAAGCATGA
||   ||| | || || ||   | |||| |      | |  | | || ||||   || | | |   | ||| |     || | |   ||  ||     | || |||    || ||   |  ||||||            |||| ||||   |  |  | |  |   || ||    | ||| |||| ||||| ||| ||| || |||||| ||||||||||||||||||| |||||||| || || |||||||||||||| || || ||||| || ||  | |||||||||||   |||
gtaaataatctcgggtttttgaatttttgcaaaaattggaatttcgt-tgactttgagatgaattgg-tttctaattattgtatcgatgtctgcaattttggtatttggatgatgacatcagatgatcttctgtttggaattgttggatatgattgtgaaaatagatggtgaaggtgtttgttatattttgtgtgtagGAAGAGTGAATCTGATAGGAGAGCACATTGACTATGAAGGATACTCAGTGTTGCCGATGGCTATTCGTCAGGATACAATTATAGCGATTCGGAAATGTGA

upper sequence: Vv05s0077g00690.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: EFJ30960 (Selaginella moellendorffii), 3'ss of exon 1
gtcggtaacacgcgtgttcatagtttttctgttggtcgtgtattgtatgacgaggaaaaggaggagatttttggagtttttgtgagtgggtgtgtggtggggattgtggtgggtttggatgattgattgatggagtatcgggaggtttttgatggttttattttttatttttgggtgcagGGAGGGTGAATTTGATAGGAGAGCACATTGATTATGAAGGCTATTCGGTGTTGCCGATGGCAATACGGCAGGACACGATCGTGGCGATTCGGAAGCATGA
                                                                                                                ||||   ||||   ||| | || |   ||   |  || |    |      |         |  ||||||  | |||||| | || || |||||||| ||||| |||||||| |||||| |||| |||||||| || ||||||||||| || |||||| |||       
----------------------------------------------------------------------------------------------------------------gttttcttgatattttgctcgatttgtggattggattggcgattggcggctcccgg----gaatgcagGTCGAGTGAATCTTATCGGCGAGCACATCGATTACGAAGGCTACTCGGTGCTGCCAATGGCAATCCGCCAGGACACGATTGTCGCGATTGGGAGATCCTC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71862723|gb|DT011778.1|DT011778
EST:     GTTCGTCGAAGTGTTCGGCCAGGCTCCTGATATTTTCGCTCGATCTCCAG                         GGAGGGTGAATTTGATAGGAGAGCACATTGATTATGAAGGCTATTCGGTGT
genomic: GTTCGTCGAAGTGTTCGGCCAGGCTCCTGATATTTTCGCTCGATCTCCAGgtcggtaaca ... ttgggtgcagGGAGGGTGAATTTGATAGGAGAGCACATTGATTATGAAGGCTATTCGGTGT
EST: gi|71883958|gb|DT033013.1|DT033013
EST:     GTTCGTCGAAGTGTTCGGCCAGGCTCCTGATATTTTCGCTCGATCTCCAG                         GGAGGGTGAATTTGATAGGAGAGCACATTGATTATGAAGGCTATTCGGTGT
genomic: GTTCGTCGAAGTGTTCGGCCAGGCTCCTGATATTTTCGCTCGATCTCCAGgtcggtaaca ... ttgggtgcagGGAGGGTGAATTTGATAGGAGAGCACATTGATTATGAAGGCTATTCGGTGT
EST: gi|71857629|gb|DT006684.1|DT006684
EST:     GTTCGTCGAAGTGTTCGGCCAGGCTCCTGATATTTTCGCTCGATCTCCAG                         GGAGGGTGAATTTGATAGGAGAGCACATTGATTATGAAGGCTATTCGGTGT
genomic: GTTCGTCGAAGTGTTCGGCCAGGCTCCTGATATTTTCGCTCGATCTCCAGgtcggtaaca ... ttgggtgcagGGAGGGTGAATTTGATAGGAGAGCACATTGATTATGAAGGCTATTCGGTGT
EST: gi|110723631|gb|EE101165.1|EE101165
EST:     GTTCGTCGAAGTGTTCGGCCAGGCTCCTGATATTTTCGCTCGATCTCCAG                         GGAGGGTGAATTTGATAGGAGAGCACATTGATTATGAAGGCTATTCGGTGT
genomic: GTTCGTCGAAGTGTTCGGCCAGGCTCCTGATATTTTCGCTCGATCTCCAGgtcggtaaca ... ttgggtgcagGGAGGGTGAATTTGATAGGAGAGCACATTGATTATGAAGGCTATTCGGTGT
EST: gi|71863613|gb|DT012668.1|DT012668
EST:     GTTCGTCGAAGTGTTCGGCCAGGCTCCTGATATTTTCGCTCGATCTCCAG                         GGAGGGTGAATTTGATAGGAGAGCACATTGATTATGAAGGCTATTCGGTGT
genomic: GTTCGTCGAAGTGTTCGGCCAGGCTCCTGATATTTTCGCTCGATCTCCAGgtcggtaaca ... ttgggtgcagGGAGGGTGAATTTGATAGGAGAGCACATTGATTATGAAGGCTATTCGGTGT
EST: gi|71858254|gb|DT007309.1|DT007309
EST:     GTTCGTCGAAGTGTTCGGCCAGGCTCCTGATATTTTCGCTCGATCTCCAG                         GGAGGGTGAATTTGATAGGAGAGCACATTGATTATGAAGGCTATTCGGTGT
genomic: GTTCGTCGAAGTGTTCGGCCAGGCTCCTGATATTTTCGCTCGATCTCCAGgtcggtaaca ... ttgggtgcagGGAGGGTGAATTTGATAGGAGAGCACATTGATTATGAAGGCTATTCGGTGT
EST: gi|33405936|gb|CF211563.1|CF211563
EST:     GTTCGTCGAAGTGTTCGGCCAGGCTCCTGATATTTTCGCTCGATCTCCAG                         GGAGGGTGAATTTGATAGGAGAGCACATTGATTATGAAGGCTATTCGGTGT
genomic: GTTCGTCGAAGTGTTCGGCCAGGCTCCTGATATTTTCGCTCGATCTCCAGgtcggtaaca ... ttgggtgcagGGAGGGTGAATTTGATAGGAGAGCACATTGATTATGAAGGCTATTCGGTGT
EST: gi|77581517|gb|DV219710.1|DV219710
EST:     GTTCGTCGAAGTGTTCGGCCAGGCTCCTGATATTTTCGCTCGATCTCCAG                         GGAGGGTGAATTTGATAGGAGAGCACATTGATTATGAAGGCTATTCGGTGT
genomic: GTTCGTCGAAGTGTTCGGCCAGGCTCCTGATATTTTCGCTCGATCTCCAGgtcggtaaca ... ttgggtgcagGGAGGGTGAATTTGATAGGAGAGCACATTGATTATGAAGGCTATTCGGTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgatggagtatcgggaggtttttgatggttttattttttatttttgggtgcagGGAGGGTGAATTTGATAGGAGAGCACATTGATTATGAAGGCTATTCGGTGTTGCCGATGGCAATACGGCAGGACACGATCGTGGCGATTCGGAAGCATGA
                     ttttgat  putative branch site (score: 4)
                              ttttattttttatttt  putative PPT
                    tttttgatggttttat  TA-rich tract