1 5' 3' | 2 5' 3' | 3 5' 3' |
...tatggctgacaagaactacattgatttgttgtttcatataggatgtataatgttaaaatcctttacatacggtttctgacatttttctatataaactcagGTCGAGTGTGAGTACCTTCCTCTATACAGCAACTATGGCATAGGTCTTACCACATGGAGTCCACTTGCATCAGGAGTGCTTACTGGAAAATACAACAAGG
species | Vitis vinifera |
transcript | Vv05s0051g00650.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGGGCCGATTGTGGAACAGCCTGAGTATAATTTGCTATCTAGGCACAAG GTCGAGTGTGAGTACCTTCCTCTATACAGCAACTATGGCATAGGTCTTACCEST: gi|161715042|gb|FC064249.1|FC064249
genomic: TCGGGCCGATTGTGGAACAGCCTGAGTATAATTTGCTATCTAGGCACAAGgtatgcaggg ... ataaactcagGTCGAGTGTGAGTACCTTCCTCTATACAGCAACTATGGCATAGGTCTTACC
EST: TCGGGCCGATTGTGGAACAGCCTGAGTATAATTTGCTATCTAGGCACAAG GTCGAGTGTGAGTACCTTCCTCTATACAGCAACTATGGCATAGGTCTTACCEST: gi|110700435|gb|EE078471.1|EE078471
genomic: TCGGGCCGATTGTGGAACAGCCTGAGTATAATTTGCTATCTAGGCACAAGgtatgcaggg ... ataaactcagGTCGAGTGTGAGTACCTTCCTCTATACAGCAACTATGGCATAGGTCTTACC
EST: TCGGGCCGATTGTGGAACAGCCTGAGTATAATTTGCTATCTAGGCACAAG GTCGAGTGTGAGTACCTTCCTCTATACAGCAACTATGGCATAGGTCTTACCEST: gi|71865439|gb|DT014494.1|DT014494
genomic: TCGGGCCGATTGTGGAACAGCCTGAGTATAATTTGCTATCTAGGCACAAGgtatgcaggg ... ataaactcagGTCGAGTGTGAGTACCTTCCTCTATACAGCAACTATGGCATAGGTCTTACC
EST: TCGGGCCGATTGTGGAACAGCCTGAGTATAATTTGCTATCTAGGCACAAG GTCGAGTGTGAGTACCTTCCTCTATACAGCAACTATGGCEST: gi|161718444|gb|FC064794.1|FC064794
genomic: TCGGGCCGATTGTGGAACAGCCTGAGTATAATTTGCTATCTAGGCACAAGgtatgcaggg ... ataaactcagGTCGAGTGTGAGTACCTTCCTCTATACAGCAACTATGGC
EST: TCGGGCCGATTGTGGAACAGCCTGAGTATAATTTGCTATCTAGGCACAAG GTCGAGTGTGAGTACCTTCCTCTATACAGCAACTATGGCATAGGTCTTACCEST: gi|110372631|gb|EC936815.1|EC936815
genomic: TCGGGCCGATTGTGGAACAGCCTGAGTATAATTTGCTATCTAGGCACAAGgtatgcaggg ... ataaactcagGTCGAGTGTGAGTACCTTCCTCTATACAGCAACTATGGCATAGGTCTTACC
EST: TCGGGCCGATTGTGGAACAGCCTGAGTATAATTTGCTGTCTAGGCACAAG GTCGAGTGTGAGTACCTTCCTCTATACAGCAACTATGGCATAGGTCTTACCEST: gi|161715169|gb|FC064278.1|FC064278
genomic: TCGGGCCGATTGTGGAACAGCCTGAGTATAATTTGCTATCTAGGCACAAGgtatgcaggg ... ataaactcagGTCGAGTGTGAGTACCTTCCTCTATACAGCAACTATGGCATAGGTCTTACC
EST: TCGGGCCGATTGTGGAACAGCCTGAGTATAATTTGCTATCTAGGCACAAG GTCGAGTGTGAGTACCTTCCTCTATACAGCAACTATGGCATAGGTCTTACCEST: gi|110715171|gb|EE092916.1|EE092916
genomic: TCGGGCCGATTGTGGAACAGCCTGAGTATAATTTGCTATCTAGGCACAAGgtatgcaggg ... ataaactcagGTCGAGTGTGAGTACCTTCCTCTATACAGCAACTATGGCATAGGTCTTACC
EST: TCGGGCCGATTGTGGAACAGCCTGAGTATAATTTGCTATCTAGGCACAAG GTCGAGTGTGAGTACCTTCCTCTATACAGCAACTATGGCATAGGTCTTACCEST: gi|110386404|gb|EC950997.1|EC950997
genomic: TCGGGCCGATTGTGGAACAGCCTGAGTATAATTTGCTATCTAGGCACAAGgtatgcaggg ... ataaactcagGTCGAGTGTGAGTACCTTCCTCTATACAGCAACTATGGCATAGGTCTTACC
EST: TCGGGCCGATTGTGGAACAGCCTGAGTATAATTTGCTATCTAGGCACAAG GTCGAGTGTGAGTACCTTCCTCTATACAGCAACTATGGCATAGGTCTTACCEST: gi|110362011|gb|EC925517.1|EC925517
genomic: TCGGGCCGATTGTGGAACAGCCTGAGTATAATTTGCTATCTAGGCACAAGgtatgcaggg ... ataaactcagGTCGAGTGTGAGTACCTTCCTCTATACAGCAACTATGGCATAGGTCTTACC
EST: TCGGGCCGATTGTGGAACAGCCTGAGTATAATTTGCTGTCTAGGCACAAG GTCGAGTGTGAGTACCTTCCTCTATACAGCAACTATGGCATAGGTCTTACCEST: gi|110710334|gb|EE086578.1|EE086578
genomic: TCGGGCCGATTGTGGAACAGCCTGAGTATAATTTGCTATCTAGGCACAAGgtatgcaggg ... ataaactcagGTCGAGTGTGAGTACCTTCCTCTATACAGCAACTATGGCATAGGTCTTACC
EST: TCGGGCCGATTGTGGAACAGCCTGAGTATAATTTGCTATCTAGGCACAAG GTCGAGTGTGAGTACCTTCCTCTATACAGCACCTATGGCATAGGTCTTAAC
genomic: TCGGGCCGATTGTGGAACAGCCTGAGTATAATTTGCTATCTAGGCACAAGgtatgcaggg ... ataaactcagGTCGAGTGTGAGTACCTTCCTCTATACAGCAACTATGGCATAGGTCTTACC
tataatgttaaaatcctttacatacggtttctgacatttttctatataaactcagGTCGAGTGTGAGTACCTTCCTCTATACAGCAACTATGGCATAGGTCTTACCACATGGAGTCCACTTGCATCAGGAGTGCTTACTGGAAAATACAACAAGG
ttctgac putative branch site (score: 2)
acatttttctatataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatggctgacaagaactacattgatttgttgtttcatataggatgtataatgttaaaatcctttacatacggtttctgacatttttctatataaactcagGTCGAGTGTGAGTACCTTCCTCTATACAGCAACTATGGCATAGGTCTTACCACATGGAGTCCACTTGCATCAGGAGTGCTTACTGGAAAATACAACAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- tggctga
- - - - -caagaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - aaaatcc