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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttctttttaatttcattatctgccttcagtttatattatttatattatcttgttgttgaagcaacgttttttgaaattttggtgaatcgtagCTGCTAGGGTTAGGGAGATATTGGAGAATGTGGGATTGGCACAAGAGGGTTTGCCTTCAAATGTGGTTGCATCGGCGCAGTGCCTTGCGAATGTGGCAAA

Basic information

species Vitis vinifera
transcript Vv05s0049g01470.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0049g01470.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA07G09310.1 (Glycine max), 3'ss of exon 1
--gttctttttaatttcattatct-gccttcagt--ttatattattta--tattatcttgttgttgaagcaacgttttttgaaattttggtgaatcgtagCTGCTAGGGTTAGGGAGATATTGGAGAATGTGGGATTGGCACAAGAGGGTTTGCCTTCAAATGTGGTTGCATCGGCGCAGTGCCTTGCGAATGTGGCAAA
    ||   ||| ||  |   | | ||||||||   |   |  ||||    ||| ||   || |  || || || |       ||  |     || | |||||| ||| |||||||||| ||||||||| ||||||||||||| ||| | |||||||| ||||||||| |||| || ||    |||||||||||||| ||
tatatccaattagttaaaaattatagccttcagccgtggaaacatttgagcattgtcaatttttaaaaccatcgatgccgattatgatttgatattgcagCTGCAAGGATTAGGGAGATTTTGGAGAATTTGGGATTGGCACAGGAGAGCTTGCCTTCTAATGTGGTTACATCCGCACAAGTTCTTGCGAATGTGGCCAA

upper sequence: Vv05s0049g01470.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA09G32470.2 (Glycine max), 3'ss of exon 2
------gttcttttta----atttcattat--ctgccttcagtttat-attatttatattatcttgttgttgaagcaacgttttttgaaa-ttttggtga-atcgtagCTGCTAGGGTTAGGGAGATATTGGAGAATGTGGGATTGGCACAAGAGGGTTTGCCTTCAAATGTGGTTGCATCGGCGCAGTGCCTTGCGAATGTGGCAAA
      |||    |||    |||| |  ||  |     |   || || |  ||  |  ||  ||||   || ||     ||      ||| |     ||| || | |||||| ||| |||||||||| ||||||||| |||||||||| || ||| | ||||| || ||||||||| ||||||| ||    ||||||||||| || ||
gttagggttagggttagggtatttgagcatagccattattgcttgatcacgatgcaattttacttggatttcaaattctgtaccaaaaaaatgaaaatgatattgcagCTGCGAGGATTAGGGAGATTTTGGAGAATCTGGGATTGGCGCAGGAGAGCTTGCCCTCCAATGTGGTTACATCGGCACAAGTTCTTGCGAATGTCGCCAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|294964637|gb|GW838440.1|GW838440
EST:     CATAGTAGCCACCGATTTCCGCCAAAAAGCCGCCGAATATCGTTGCCAAG                         CTGCTAGGGTTAGGGAGATATTGGAGAATGTGGGATTGGCACAAGAGGGTT
genomic: CATAGTAGCCACCGATTTCCGCCAAAAAGCCGCCGAATATCGTTGCCAAGgttcttttta ... tgaatcgtagCTGCTAGGGTTAGGGAGATATTGGAGAATGTGGGATTGGCACAAGAGGGTT
EST: gi|349812735|gb|FQ409894.1|FQ409894
EST:     CATAGTAGCCACCGATTTCCGCCAAAAAGCCGCCGAATATCGTTGCCAAG                         CTGCTAGGGTTAGGGAGATATTGGAGAATGTGGGATTGGCACAAGAGGGCT
genomic: CATAGTAGCCACCGATTTCCGCCAAAAAGCCGCCGAATATCGTTGCCAAGgttcttttta ... tgaatcgtagCTGCTAGGGTTAGGGAGATATTGGAGAATGTGGGATTGGCACAAGAGGGTT
EST: gi|37190379|gb|CF609728.1|CF609728
EST:     ATAGTAGCCACCGATTTCCGCCAAAAAGCCGCCGAATATCGTTTGCCAAG                         CTGCTAGGGGTAGGGAGATATTGGAG
genomic: ATAGTAGCCACCGATTTCCGCCAAAAAGCCGCCGAATATCGTT-GCCAAGgttcttttta ... tgaatcgtagCTGCTAGGGTTAGGGAGATATTGGAG
EST: gi|349815651|gb|FQ400807.1|FQ400807
EST:     CATAGTAGCCACCGATTTCCGCCAAAAAGCCGCCGAATATCGTTGCCAAG                         CTGCTAGGGTTAGGGAGATATTGGAGAATGTGGGATTGGCACAAGAGGGCT
genomic: CATAGTAGCCACCGATTTCCGCCAAAAAGCCGCCGAATATCGTTGCCAAGgttcttttta ... tgaatcgtagCTGCTAGGGTTAGGGAGATATTGGAGAATGTGGGATTGGCACAAGAGGGTT
EST: gi|351044677|gb|FQ443208.1|FQ443208
EST:     CATAGTAGCCACCGATTTCCGCCAAAAAGCCGCCGAATATCGTTGCCAAG                         CTGCTAGGGTTAGGGAGATATTGGAGAATGTGGGATTGGCACAAGAGGGTT
genomic: CATAGTAGCCACCGATTTCCGCCAAAAAGCCGCCGAATATCGTTGCCAAGgttcttttta ... tgaatcgtagCTGCTAGGGTTAGGGAGATATTGGAGAATGTGGGATTGGCACAAGAGGGTT
EST: gi|349812781|gb|FQ410423.1|FQ410423
EST:     CATAGTAGCCACCGATTTCCGCCAAAAAGCCGCCGAATATCGTTGCCAAG                         CTGCTAGGGTTAGGGAGATATTGGAGAATGTGGGATTGGCACAAGAGGGCT
genomic: CATAGTAGCCACCGATTTCCGCCAAAAAGCCGCCGAATATCGTTGCCAAGgttcttttta ... tgaatcgtagCTGCTAGGGTTAGGGAGATATTGGAGAATGTGGGATTGGCACAAGAGGGTT
EST: gi|110718784|gb|EE096009.1|EE096009
EST:     CATAGTAGCCACCGATTTCCGCCAAAAAGCAGCCGAATATCGTTGCCAAG                         CTGCTAGGGTTAGGGAGATATTGGAGAATGTGGGATTGGCACAAGAGGGTT
genomic: CATAGTAGCCACCGATTTCCGCCAAAAAGCCGCCGAATATCGTTGCCAAGgttcttttta ... tgaatcgtagCTGCTAGGGTTAGGGAGATATTGGAGAATGTGGGATTGGCACAAGAGGGTT
EST: gi|161713410|gb|FC063390.1|FC063390
EST:     CATAGTAGCCACCGATTTCCGCCAAAAAGCCGCCGAATATCGTTGCCAAG                         CTGCTAGGGTTAGGGAGATATTGGAGAATGTGGGATTGGCACAAGAGGGTT
genomic: CATAGTAGCCACCGATTTCCGCCAAAAAGCCGCCGAATATCGTTGCCAAGgttcttttta ... tgaatcgtagCTGCTAGGGTTAGGGAGATATTGGAGAATGTGGGATTGGCACAAGAGGGTT
EST: gi|110730524|gb|EE107704.1|EE107704
EST:     CATAGTAGCCACCGATTTCCGCCAAAAAGCCGCCGAATATCGTTGCCAAG                         CTGCTAGGGTTAGGGAGATATTGGAGAATGTGGGATTGGCACAAGAGGGTT
genomic: CATAGTAGCCACCGATTTCCGCCAAAAAGCCGCCGAATATCGTTGCCAAGgttcttttta ... tgaatcgtagCTGCTAGGGTTAGGGAGATATTGGAGAATGTGGGATTGGCACAAGAGGGTT
EST: gi|351044047|gb|FQ452720.1|FQ452720
EST:     CATAGTAGCCACCGATTTCCGCCAAAAAGCCGCCGAATATCGTTGCCAAG                         CTGCTAGGGTTAGGGAGATATTGGAGAATGTGGGATTGGCACAAGAGGGTT
genomic: CATAGTAGCCACCGATTTCCGCCAAAAAGCCGCCGAATATCGTTGCCAAGgttcttttta ... tgaatcgtagCTGCTAGGGTTAGGGAGATATTGGAGAATGTGGGATTGGCACAAGAGGGTT
EST: gi|110687005|gb|EE064039.1|EE064039
EST:     CGCCGAATATCGTTGCCAAG                         CTGCTAGGGTTAGGGAGATATTGGAGAATGTGGGATTGGCACAAGAGGGTT
genomic: CGCCGAATATCGTTGCCAAGgttcttttta ... tgaatcgtagCTGCTAGGGTTAGGGAGATATTGGAGAATGTGGGATTGGCACAAGAGGGTT
EST: gi|351032507|gb|FQ458872.1|FQ458872
EST:     CATAGTAGCCACCGATTTCCGCCAAAAAGCCGCCGAATATCGTTGCCAAG                         CTGCTAGGGTTAGGGAGATATTGGAGAATGTGGGATTGGCACAAGAGGGTT
genomic: CATAGTAGCCACCGATTTCCGCCAAAAAGCCGCCGAATATCGTTGCCAAGgttcttttta ... tgaatcgtagCTGCTAGGGTTAGGGAGATATTGGAGAATGTGGGATTGGCACAAGAGGGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttatattatcttgttgttgaagcaacgttttttgaaattttggtgaatcgtagCTGCTAGGGTTAGGGAGATATTGGAGAATGTGGGATTGGCACAAGAGGGTTTGCCTTCAAATGTGGTTGCATCGGCGCAGTGCCTTGCGAATGTGGCAAA
                             ttttttgaaatttt  TA-rich tract