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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcctccttttcttctttttcctttccctttccctttttttccctcatcgattccttcgtattttccggcatacctgaaacccaggcactgcaattattgcaagtatgggtgatgaggtaaaagtgaccgccacgtgccttttgtccgtacagGAATGCGTCGTCCTTCCTGGAACAAATCGCAGGCGATCCAGCAGGTTATTTCGCTTAAATCGTTGCTCGAAACCAGTGAGGGCAGCGGTGCCGGAGTTTT

Basic information

species Vitis vinifera
transcript Vv05s0020g04060.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g04060.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA10G38970.1 (Glycine max), 3'ss of exon 1
gttcctccttttcttctttttcctttccc------tttcc-------------ctttttttccctcatcgattccttcgtattttccg--------------gcatacctgaaacccaggcactgcaattattgcaagtatgggtgatgaggtaaa------agtgaccgccacgt----gccttttgtccgtacagGAATGCGTCGTCCTTCCTGGAACAAATCGCAGGCGATCCAGCAGGTTATTTCGCTTAAATCGTTGCTCGAAACCAGTGAGGGCAGCGGTGCCGGAGTTTT
|| ||| || ||  ||| | | || |||       |||||             | |   |||||  |   |     || |||| |                 ||   |  |  |  | ||   |  ||  |||  |  ||  |   ||||  | ||      | | |     | ||    | |   ||| |||||||| |||||| | ||||||||||||||||||||||||||||| ||||| ||||| || ||| || |||| ||| |    || |       | |      |  
gtcccttctctttctctctcttctctcctccatgatttccggcacctgaaaaacctccattcccctaaatacattatcatattatttattaaaacattaatcgctcgctcgggatgcgggttttttaaaaattaaatttaacgagaatgatattaatagttaattaattaaaatgtcgaagacacgtgttcgtacagGGATGCGTAGGCCTTCCTGGAACAAATCGCAGGCGATCCAACAGGTCATTTCCCTGAAAGCGCTGCTGGAACCTTCCGACGATGATACTCCTCCTCCTCC

upper sequence: Vv05s0020g04060.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA20G28840.1 (Glycine max), 3'ss of exon 1
gttcctccttttcttctttttcctttccctttccctttttttccctcatcgattccttcgtattttccggcatacctgaaaccca--ggcactgcaattattgcaagtatgggtgatgaggtaaaagtgaccgccacgtgccttttgtccgtacagGAATGCGTCGTCCTTCCTGGAACAAATCGCAGGCGATCCAGCAGGTTATTTCGCTTAAATCGTTGCTCGAAACCAGTGAGGGCAGCGGTGCCGGAGTTTT
                                                 ||        || ||||     |||  | |||   |  |  |  |  |||| || |   ||   |  | |  | ||| || ||   ||  |     ||| |||||||| |||||  | ||||||||||||||||||||||||||||| ||||| ||||| || ||| || |||| ||| |    || |       | |      |  
-------------------------------------------------cgggatgcgggtttttttaattataaattaaatttaacgagaacgatattaatgaattaataattagtaa--ttaaaatgtccaagacacg-----tgttcgtacagGGATGCGCAGGCCTTCCTGGAACAAATCGCAGGCGATCCAACAGGTCATTTCCCTGAAAGCGCTGCTGGAACCTTCCGACGATGATACTCCTCCTCCTAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcaagtatgggtgatgaggtaaaagtgaccgccacgtgccttttgtccgtacagGAATGCGTCGTCCTTCCTGGAACAAATCGCAGGCGATCCAGCAGGTTATTTCGCTTAAATCGTTGCTCGAAACCAGTGAGGGCAGCGGTGCCGGAGTTTT
                                       ccttttgtcc  CT-rich tract
                    taaaagt  TA-rich tract