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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcaaagccctaactttctttcagtttagtttgatttctgtttcggtgctttgaatttagctgatattgaaaatgatgttaatgtaattagGTCGAATTGGAGAGGTGAAAAGGGTTACTAAAGAAACCAATGTAATGGTCTCAATGAACTTGGATGGTTCAGGCGTTGCTCAAAATGATACTGGAATCCC

Basic information

species Vitis vinifera
transcript Vv05s0020g03430.t01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349810627|gb|FQ402870.1|FQ402870
EST:     ATCGGTCGATGAGAATGGCTCTCCGATAATGTCTTCCTCTATCCGCACAG                         GTCGAATTGGAGAGGTGAAAAGGGTTACTAAAGAAACCAATGTAATGGTCT
genomic: ATCGGTCGATGAGAATGGCTCTCCGATAATGTCTTCCTCCATCCGCACAGgtcaaagccc ... atgtaattagGTCGAATTGGAGAGGTGAAAAGGGTTACTAAAGAAACCAATGTAATGGTCT
EST: gi|349819838|gb|FQ404584.1|FQ404584
EST:     ATCGGTCGATGAGAATGGCTCTCCGATAATGTCTTCCTCTATCCGCACAG                         GTCGAATTGGAGAGGTGAAAAGGGTTACTAAAGAAACCAATGTAATGGTCT
genomic: ATCGGTCGATGAGAATGGCTCTCCGATAATGTCTTCCTCCATCCGCACAGgtcaaagccc ... atgtaattagGTCGAATTGGAGAGGTGAAAAGGGTTACTAAAGAAACCAATGTAATGGTCT
EST: gi|32269286|gb|CD718445.1|CD718445
EST:     ATCGGTCGATGAGAATGGCTCTCCGATAATGTCTTCCTCCATCCGCACAG                         GTCGAATTGGAGAGGTGAAAAGGGTTACTAAAGAAACCAATGTAATGGTCT
genomic: ATCGGTCGATGAGAATGGCTCTCCGATAATGTCTTCCTCCATCCGCACAGgtcaaagccc ... atgtaattagGTCGAATTGGAGAGGTGAAAAGGGTTACTAAAGAAACCAATGTAATGGTCT
EST: gi|30303775|gb|CB980569.1|CB980569
EST:     ATCGGTCGATGAGAATGGCTCTCCGATAACGTCTTCCTCCATCCGCACAG                         GTCGAATTGGAGAGGTGAAAAGGGTTACTAAAGAAACCAATGTAATGGTCT
genomic: ATCGGTCGATGAGAATGGCTCTCCGATAATGTCTTCCTCCATCCGCACAGgtcaaagccc ... atgtaattagGTCGAATTGGAGAGGTGAAAAGGGTTACTAAAGAAACCAATGTAATGGTCT
EST: gi|161721145|gb|FC070387.1|FC070387
EST:     ATCGGTCGATGAGAATGGCTCTCCGATAATGTCTTCCTCCATCCGCACAG                         GTCGAATTGGAGAGGTGAAAAGGGTTACTAAAGAAACCAATGTAATGGTCT
genomic: ATCGGTCGATGAGAATGGCTCTCCGATAATGTCTTCCTCCATCCGCACAGgtcaaagccc ... atgtaattagGTCGAATTGGAGAGGTGAAAAGGGTTACTAAAGAAACCAATGTAATGGTCT
EST: gi|71859299|gb|DT008354.1|DT008354
EST:     ATCGGTCGATGAGAATGGCTCTCCGATAATGTCTTCCTCCATCCGCACAG                         GTCGAATTGGAGAGGTGAAAAGGGTTACTAAAGAAACCAATGTAATGGTCT
genomic: ATCGGTCGATGAGAATGGCTCTCCGATAATGTCTTCCTCCATCCGCACAGgtcaaagccc ... atgtaattagGTCGAATTGGAGAGGTGAAAAGGGTTACTAAAGAAACCAATGTAATGGTCT
EST: gi|349808885|gb|FQ406735.1|FQ406735
EST:     ATCGGTCGATGAGAATGGCTCTCCGATAATGTCTTCCTCTATCCGCGCAG                         GTCGAATTGGAGAGGTGAAAAGGGTTACTAAAGAAACCAATGTAATGGTCT
genomic: ATCGGTCGATGAGAATGGCTCTCCGATAATGTCTTCCTCCATCCGCACAGgtcaaagccc ... atgtaattagGTCGAATTGGAGAGGTGAAAAGGGTTACTAAAGAAACCAATGTAATGGTCT
EST: gi|32272189|gb|CD721348.1|CD721348
EST:     ATCGGTCGATGAGAATGGCTCTCCGATAATGTCTTCCTCCATCCGCACAG                         GTCGAATTGGAGAGGTGAAAAGGGTTACTAAAGAAACCAATGTAATGGTCT
genomic: ATCGGTCGATGAGAATGGCTCTCCGATAATGTCTTCCTCCATCCGCACAGgtcaaagccc ... atgtaattagGTCGAATTGGAGAGGTGAAAAGGGTTACTAAAGAAACCAATGTAATGGTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgtttcggtgctttgaatttagctgatattgaaaatgatgttaatgtaattagGTCGAATTGGAGAGGTGAAAAGGGTTACTAAAGAAACCAATGTAATGGTCTCAATGAACTTGGATGGTTCAGGCGTTGCTCAAAATGATACTGGAATCCC
                                        tgttaat  putative branch site (score: 3)
                           atattgaaaatgatgt  TA-rich tract