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gtaattgcaccgttttttccacctctgtgatgttgatttcgattctcatgagtttttgaatacattgactgagtttgtaatcgttgttgacagTGTGGGTATTCTTCTCCTACGCAATCTGAGATCATCAGTGATCTTGGACTTTCCCTTTCAGAG
species | Vitis vinifera |
transcript | Vv04s0023g01860.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCCTATGCGTCCTCATCGTTGCTCTGGGTCCCATTCAGTTCGGCTTCACC TGTGGGTATTCTTCTCCTACGCAATCTGAGATCATCAGTGATCTTGGACTTEST: gi|161706203|gb|FC054967.1|FC054967
genomic: TCCTATGCGTCCTCATCGTTGCTCTGGGTCCCATTCAGTTCGGCTTCACCgtaattgcac ... ttgttgacagTGTGGGTATTCTTCTCCTACGCAATCTGAGATCATCAGTGATCTTGGACTT
EST: TCCTATGCGTCCTCATCGTTGCTCTGGGTCCCATTCAGTTCGGCTTCACC TGTGGGTATTCTTCTCCTACGCAATCTGAGATCATCAGTGATCTTGGACTTEST: gi|71882686|gb|DT031741.1|DT031741
genomic: TCCTATGCGTCCTCATCGTTGCTCTGGGTCCCATTCAGTTCGGCTTCACCgtaattgcac ... ttgttgacagTGTGGGTATTCTTCTCCTACGCAATCTGAGATCATCAGTGATCTTGGACTT
EST: TCCTATGCGTCCTCATCGTTGCTCTGGGTCCCATTCAGTTCGGCTTCACC TGTGGGTATTCTTCTCCTACGCAATCTGAGATCATCAGTGATCTTGGACTTEST: gi|71885656|gb|DT034711.1|DT034711
genomic: TCCTATGCGTCCTCATCGTTGCTCTGGGTCCCATTCAGTTCGGCTTCACCgtaattgcac ... ttgttgacagTGTGGGTATTCTTCTCCTACGCAATCTGAGATCATCAGTGATCTTGGACTT
EST: TCCTATGCGTCCTCATCGTTGCTCTGGGTCCCATTCAGTTCGGCTTCACC TGTGGGTATTCTTCTCCTACGCAATCTGAGATCATCAGTGATCTTGGACTTEST: gi|71882039|gb|DT031094.1|DT031094
genomic: TCCTATGCGTCCTCATCGTTGCTCTGGGTCCCATTCAGTTCGGCTTCACCgtaattgcac ... ttgttgacagTGTGGGTATTCTTCTCCTACGCAATCTGAGATCATCAGTGATCTTGGACTT
EST: TCCTATGCGTCCTCATCGTTGCTCTGGGTCCCATTCAGTTCGGCTTCACC TGTGGGTATTCTTCTCCTACGCAATCTGAGATCATCAGTGATCTTGGACTTEST: gi|71882706|gb|DT031761.1|DT031761
genomic: TCCTATGCGTCCTCATCGTTGCTCTGGGTCCCATTCAGTTCGGCTTCACCgtaattgcac ... ttgttgacagTGTGGGTATTCTTCTCCTACGCAATCTGAGATCATCAGTGATCTTGGACTT
EST: TCCTATGCGTCCTCATCGTTGCTCTGGGTCCCATTCAGTTCGGCTTCACC TGTGGGTATTCTTCTCCTACGCAATCTGAGATCATCAGTGATCTTGGACTTEST: gi|71889871|gb|DT038926.1|DT038926
genomic: TCCTATGCGTCCTCATCGTTGCTCTGGGTCCCATTCAGTTCGGCTTCACCgtaattgcac ... ttgttgacagTGTGGGTATTCTTCTCCTACGCAATCTGAGATCATCAGTGATCTTGGACTT
EST: TCCTATGCGTCCTCATCGTTGCTCTGGGTCCCATTCAGTTCGGCTTCACC TGTGGGTATTCTTCTCCTACGCAATCTGAGATCATCAGTGATCTTGGACTT
genomic: TCCTATGCGTCCTCATCGTTGCTCTGGGTCCCATTCAGTTCGGCTTCACCgtaattgcac ... ttgttgacagTGTGGGTATTCTTCTCCTACGCAATCTGAGATCATCAGTGATCTTGGACTT
tcgattctcatgagtttttgaatacattgactgagtttgtaatcgttgttgacagTGTGGGTATTCTTCTCCTACGCAATCTGAGATCATCAGTGATCTTGGACTTTCCCTTTCAGAG
cattgac putative branch site (score: 3)
tttttgaatacatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattgcaccgttttttccacctctgtgatgttgatttcgattctcatgagtttttgaatacattgactgagtttgtaatcgttgttgacagTGTGGGTATTCTTCTCCTACGCAATCTGAGATCATCAGTGATCTTGGACTTTCCCTTTCAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA