Sequence
atgc intronic sequence ATGC exonic sequence...taatttttctgtttttcaaactaagaaagtgagattttactgacagtttccggggaattgagaattttactttgttaaattgatgattctattgatacagGTTTTGAGCGATCCGCAGAAAAAGGTGGTTTATGATCAGCATGGTGAAGAAGGGTTGAAAGACATGCCACCTCCTGGCAGTGGTGGTGGATTCCCCTTTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0008g04300.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA06G07710.1 (Glycine max), 3'ss of exon 1
-----taatttttct-gtttttca--aactaagaaagtgagat-tttactgacagtttccggggaattgagaattttactttgttaaattgatgattctattgatacagGTTTTGAGCGATCCGCAGAAAAAGGTGGTTTATGATCAGCATGGTGAAGAAGGGTTGAAAGACATGCCACCTCCTGGCAGTGGTGGTGGATTCCCCTTTG-
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gtatacaattttaatagtttgttattaactgtacaagtttaatatttaacaatggggttgggataag-gagaa----aaattgagaaattt----tttggtgaattcagGTACTGAGCGATCCACAGAAGAGGGTGGTTTATGATCAGGATGGAGAGGAAGGGCTGAAAGATAGGCCACCACCAGGTAATGA-ATCAGCATCAAGTGGGTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110713920|gb|EE090265.1|EE090265EST: ACAAGAAGGAGGCTGAAGCCAAGTTTAAGCAAATCTCTGAGGCTTATGAG GTTTTGAGTGATCCACAGAAAAAGGTGGTTTATGATCAGCATGGGGAAGAA
genomic: ACAAGAAGGAGGCTGAAGCCAAGTTTAAGCAAATCTCTGAGGCTTATGAGgtttcattcc ... attgatacagGTTTTGAGCGATCCGCAGAAAAAGGTGGTTTATGATCAGCATGGTGAAGAA
EST:
gi|37183969|gb|CF603323.1|CF603323EST: ACAAGAAGGAGGCTGAAGCCAAGTTTAAGCAAATCTCTGAGGCTTATGAG GTTTTGAGCGATCCGCAGAAAAAGGTGGTTTATGATCAGCATGGTGAAGAA
genomic: ACAAGAAGGAGGCTGAAGCCAAGTTTAAGCAAATCTCTGAGGCTTATGAGgtttcattcc ... attgatacagGTTTTGAGCGATCCGCAGAAAAAGGTGGTTTATGATCAGCATGGTGAAGAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtttccggggaattgagaattttactttgttaaattgatgattctattgatacagGTTTTGAGCGATCCGCAGAAAAAGGTGGTTTATGATCAGCATGGTGAAGAAGGGTTGAAAGACATGCCACCTCCTGGCAGTGGTGGTGGATTCCCCTTTG
tattgat putative branch site (score: 3)
ttctatt CT-rich tract
aattttactttgttaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
taatttttctgtttttcaaactaagaaagtgagattttactgacagtttccggggaattgagaattttactttgttaaattgatgattctattgatacagGTTTTGAGCGATCCGCAGAAAAAGGTGGTTTATGATCAGCATGGTGAAGAAGGGTTGAAAGACATGCCACCTCCTGGCAGTGGTGGTGGATTCCCCTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - -aaactaa
- - - - - - - - - - - - -aaagtga
- - - - - - - - - - - - - - - - - - -tactgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaattga