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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgagaaaactaaaatcaatacatttagtgtgtacgaccaccctcacttatcatgcttaaatttattgaatcctcaatcccatttgtgtatgcaagagtttgttgaatttaatttgagtattgatatattttatataatgacttattttcagGAAAATTTTGAAGGAATATGCTGGAGAAATAGAAAAATTAGCTTTCAAGCTCTTGGAACTCATCTCCTTAAGCTTAGGCTTGGCCGGGGACCGGTTGATT

Basic information

species Vitis vinifera
transcript Vv03s0063g01340.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0063g01340.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT3G19010.2 (Arabidopsis thaliana), 3'ss of exon 1
gtgagtgagaaaactaaaatcaatacatttagtgtgtacgaccaccctcacttatcatgcttaaatttattgaatcctcaatcccatttgtgtatgcaagagtttgttgaatttaatttgagt--attgatat-attttatataatgacttattttcagGAAAATTTTGAAGGAATATGCTGGAGAAATAGAAAAATTAGCTTTCAAGCTCTTGGAACTCATCTCCTTAAGCTTAGGCTTGGCCGGGGACCGGTTGATT
                                                       ||    |  || |  |   |       | ||| |||||| |  | | | | || | ||| | ||  ||    | || | |||||   |  | | ||||| | ||| ||   |   | | ||||||  || |    ||||||||||| ||||||||||||||||| || || ||||||||||||||| |    || || ||   |
------------------------------------------------------ccaccactgtatatgataggtta-----cacatgtgtgtaggtgaaattatttttattttcagttatgttagctaattttatttttggttctaatttattattagGGAAGCATGTGAAGTATATGCGAGACACGCTGAAAAATTAGCGTTCAAGCTCTTGGAACTGATTTCGTTAAGCTTAGGCTTGCCAAAAGAGCGTTTTCAT

upper sequence: Vv03s0063g01340.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT3G19010.3 (Arabidopsis thaliana), 3'ss of exon 2
gtgagtgagaaaactaaaatcaatacatttagtgtgtacgaccaccctcacttatcatgcttaaatttattgaatcctcaatcccatttgtgtatgcaagagtttgttgaatttaatttgagtattgatatattttatataatgacttattttcagGAAAATTTTGAAGGAATAT-GCTGGAGAAATAGAAAAATTAGCTTTCAAGCTCTTGGAACTCATCTCCTTAAGCTTAGGCTTGGCCGGGGACCGGTTGATT
                           || |   | |  || |    |   |  | | |||||   ||    ||    |  |  |||   |   |  ||||     | || |||  ||| || ||  ||   || |  |  ||| |  |          |  |||    |    |  |   | | ||    |  |||    || |     |  |  | || |                                   
--------------------------gttcaagctcttggaactgatt---tcgttaagcttaggcttgccaaaagagcgttttcatgactacttcaaagaacaaat-gagttt--tttcagGATAAAT-CGTTATCCACCATGTCCAAGACCTGACCTAGCTTTAGGTGTTGGTCACCACAAAGATGCCGACGTTATTAGTCTATTGGCTCAAGATGATGTT----------------------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttgttgaatttaatttgagtattgatatattttatataatgacttattttcagGAAAATTTTGAAGGAATATGCTGGAGAAATAGAAAAATTAGCTTTCAAGCTCTTGGAACTCATCTCCTTAAGCTTAGGCTTGGCCGGGGACCGGTTGATT
                     tattgat  putative branch site (score: 3)
                                            cttattttc  putative PPT
     ttgaatttaatttgag  TA-rich tract