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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggggaaaaagaagccggacccaattaaccaagagtcgtaactattgttaacagttttgagcagcaaagggtttaatgggcctaaattctgtgttttgcagGTTAAAGTTGAGAGTTTGAAGGGGAAGAAAATTTGGCTATATTTTTCAGCATCATGGTGTGGGCCATGTCGGCGGTTCACCCCTAAATTAGTTGAGGCCT

Basic information

species Vitis vinifera
transcript Vv01s0127g00560.t01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110724229|gb|EE099872.1|EE099872
EST:     GACTTTCTTGTCCGCAACAATGGCCACCAG                         GTTAAAGTTGAGAGTTTGAAGGGGAAGAAAATTTGGCTATATTTTTCAGCA
genomic: GACTTTCTTGTCCGCAACAATGGCCACCAGgtatttccca ... tgttttgcagGTTAAAGTTGAGAGTTTGAAGGGGAAGAAAATTTGGCTATATTTTTCAGCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttaacagttttgagcagcaaagggtttaatgggcctaaattctgtgttttgcagGTTAAAGTTGAGAGTTTGAAGGGGAAGAAAATTTGGCTATATTTTTCAGCATCATGGTGTGGGCCATGTCGGCGGTTCACCCCTAAATTAGTTGAGGCCT
                                    taaattct  TA-rich tract