Sequence
atgc intronic sequence ATGC exonic sequence...tttttaaaacttgatactattttcaacacatagattactttttagtatcctgcatttgaaatttttgttggtcttaacacatgttgctaaaatttatcagTGTTTGGGTTGCTCGGAGACCACCGGGTTATGCTTTTGTTGAGTTTGCTGATCGTAGGGATGCTGTAGATGCAATTCGTGGATTGGATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0026g00250.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: LOC_Os02g39720.3 (Oryza sativa), 3'ss of exon 2
tttttaaaacttgatactattttcaacacatagattactttttagt-at-cctgcatttgaaatt------tttgttggtcttaacacatgttgctaaaatttatcagTGTTTGGGTTGCTCGGAGACCACCGGGTTATGCTTTTGTTGAGTTTGCTGATCGTAGGGATGCTGTAGATGCAATTCGTGGATTGGATG
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--------aattcatagtctatatggagcagtaatgatttcttaattatgtctgcaaatgagattatctgattcttccactttcaactgagttgtttcttctatgcagTGTATGGGTTGCTAGAAAACCACCAGGTTTTGCCTTTATTGACTTTGATGACCGCAGGGATGCAGAAGATGCAATTCGTGATTTAGATG
upper sequence: Vv01s0026g00250.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA18G18860.1 (Glycine max), 3'ss of exon 2
tttttaaaacttgatactattttcaacacatagattactttttagtatcctgcatttgaaatttttgttg---gtcttaacac-atgtt-gctaaaatttatcagTGTTTGGGTTGCTCGGAGACCACCGGGTTATGCTTTTGTTGAGTTTGCTGATCGTAGGGATGCTGTAGATGCAATTCGTGGATTGGATG
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--gttgaattttgtttgtggtgtttcttttttcatgacttgttt-tgttctatgtatggtttgttggttgcatgtcttattttgatgtttggtcataaatg-caGTGTCTGGGTTGCTCGTAGACCACCAGGATATGCATTTATTGAGTTTGATGATCGGAGGGATGCACTTGATGCAATTCAGGCCTTGGAT-
upper sequence: Vv01s0026g00250.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA08G39830.1 (Glycine max), 3'ss of exon 2
-tttttaaaacttgatactattttcaacacatagattactt-tttagtatcctgcatttgaaatttttgttggtcttaacacatgttgctaaaatttatcagTGTTTGGGTTGCTCGGAGACCACCGGGTTATGCTTTTGTTGAGTTTGCTGATCGTAGGGATGCTGTAGATGCAATTCGTGGATTGGATG
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aattttgtttgtgctgatcattttcatcacttgtgttctatgtatggtttgttggttaccagtcttattttgatgtttg-gtactttggttataaatat-agTGTCTGGGTTGCTCGAAGACCACCGGGATATGCATTTATTGAGTTTGATGATAGGAGGGATGCACTTGATGCAATTCAGGCCTTGGATG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatcctgcatttgaaatttttgttggtcttaacacatgttgctaaaatttatcagTGTTTGGGTTGCTCGGAGACCACCGGGTTATGCTTTTGTTGAGTTTGCTGATCGTAGGGATGCTGTAGATGCAATTCGTGGATTGGATG
tgctaaa putative branch site (score: 2)
atttgaaatttttgtt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttttaaaacttgatactattttcaacacatagattactttttagtatcctgcatttgaaatttttgttggtcttaacacatgttgctaaaatttatcagTGTTTGGGTTGCTCGGAGACCACCGGGTTATGCTTTTGTTGAGTTTGCTGATCGTAGGGATGCTGTAGATGCAATTCGTGGATTGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - -aaaactt
- - - - - - - - - - - -caacaca
- - - - - - - - - - - - - - - - - - - - - - - -tcctgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acacatg