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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataacgcacttctgcttctcctgttctcccactactgcattaaatttttttgtatgttcatagcatcttaaccaatgacctataaatttagGTGAACCTCTTTGTGGATCATTCTCAAGTCATGGATTTGGAGTGCCTCCGAGGGCGTAACTTGGGTATAAACCACACATCTGTTCTCGGTTCTTCATACT

Basic information

species Vitis vinifera
transcript Vv00s0960g00040.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0960g00040.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA08G06660.1 (Glycine max), 3'ss of exon 4
-gtataacgcacttctgcttctcctgttctcccactactgcattaaatttttt---tgtatgttcatagcatcttaacca--atgaccta--taaatttagGTGAACCTCTTTGTGGATCATTCTCAAGTCATGGATTTGGAGTGCCTCCGAGGGCGTAACTTGGGTATAAACCACACATCTGTTCTCGGTTCTTCATACT
   ||  | | ||||| | |   || ||  || || ||| |   ||   |        |||||| | ||| |  |   ||  ||    |   ||  || |||||||||||||| | ||||||||  | ||  ||||| ||||||||||| | ||||| |||||||||| ||| |   | ||| | || ||| ||||| | |
cccatctctcccttctcccttcactctttcccaaccacttccccaagaataagaaacctatgtt-acagctttgttgacattattgtttggttatgttcagGTGAACCTCTTTATTGATCATTCGAACGTGGTGGATGTGGAGTGCCTCAGGGGGCGCAACTTGGGTAGAAATCTTGCTTCTTTCCTTGGTGCTTCAGATT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcattaaatttttttgtatgttcatagcatcttaaccaatgacctataaatttagGTGAACCTCTTTGTGGATCATTCTCAAGTCATGGATTTGGAGTGCCTCCGAGGGCGTAACTTGGGTATAAACCACACATCTGTTCTCGGTTCTTCATACT
                             tcttaac  putative branch site (score: 2)
     aaatttttttgtatgt  TA-rich tract