Sequence
atgc intronic sequence ATGC exonic sequence...attggaaggctcttgctcctatgttttagtattgaatctgttctctttgcattgccatgatgctcatacctggggctaagcaaattggaggtttttgcagCAAAGCTTTTTAGAAGAGTTGGAAAAGACTGTTGCGCTGTTGGCATTTGAAGATTTCTCTAACTGCCCTGTTGGTGAACTCCTGGACATATCACAACGCC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0445g00060.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA15G07570.3 (Glycine max), 3'ss of exon 5
attggaaggctcttgctcctatgttttagtattgaatctgttctctttgcattgccatgatgctcat---acctggggctaagcaaattggaggtt--tttgcagCAAAGCTTTTTAGAAGAGTTGGAAAAGACTGTTGCGCTGTTGGCATTTGAAGATTTCTCTAACTGCCCTGTTGGTGAACTCCTGGACATATCACAACGCC
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--taattgcttgtagttaagaaaaatacaaaatgggaaagtaaattgt-tattgtggaaaattttatgcaacttggtgctaac--acttgcctgttggatttcagCAAAGCTTTTTGGAAGAGTTGGAGAGGACTGTTGCACTTCTTGCCTTTGAAGATGTTTCTAACTGTCCTGTTGGAGAGCTGCTTGACATATCACAGCGCT
upper sequence: Vv00s0445g00060.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA13G31720.1 (Glycine max), 3'ss of exon 4
attggaaggctcttgctcctatgttttagtattgaatctgttctctttgcattgccatgatgctcatacctggggctaagcaaattggaggtt--tttgcagCAAAGCTTTTTAGAAGAGTTGGAAAAGACTGTTGCGCTGTTGGCATTTGAAGATTTCTCTAACTGCCCTGTTGGTGAACTCCTGGACATATCACAACGCC
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ttaagaaaaatccaatatgggaaagtaaattgttattgtggaaaatttgtatgtaactgtttcagagacttggggctaat--acttgcctgttggatttcagCAAAGTTTTTTGGAAGAGTTGGAGAGGACTGTTGCACTTCTTGCCTTTGAAGATGTTTCTAACTGTCCTGTTGGAGAGCTGCTTGACATATCACAGCGTT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttgcattgccatgatgctcatacctggggctaagcaaattggaggtttttgcagCAAAGCTTTTTAGAAGAGTTGGAAAAGACTGTTGCGCTGTTGGCATTTGAAGATTTCTCTAACTGCCCTGTTGGTGAACTCCTGGACATATCACAACGCC
tttttgc CT-rich tract
aaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
attggaaggctcttgctcctatgttttagtattgaatctgttctctttgcattgccatgatgctcatacctggggctaagcaaattggaggtttttgcagCAAAGCTTTTTAGAAGAGTTGGAAAAGACTGTTGCGCTGTTGGCATTTGAAGATTTCTCTAACTGCCCTGTTGGTGAACTCCTGGACATATCACAACGCC
- -ggaaggc
- - - - - - -tgctcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - ccatgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catacct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagcaaa