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gttagactctttttttcttctgaatttagattctgtgttgcgtcgatctcattactacgtttctgaagatatatatttgctttgatttcagATCCTCCGCTTTGCCTTTGCAAAGCTTCAATTGCCACGGAAGAAAGGCTATTTGCTCTGTTCACAATCTG
species | Vitis vinifera |
transcript | Vv00s0250g00020.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGCAGATATTTCTCTGGACTATCGATGAATTGCCTTCAGAATCTTCCCAG ATCCTCCGCTTTGCCTTTGCAAAGCTTCAATTGCCACGGAAGAAAGGCTATEST: gi|71860017|gb|DT009072.1|DT009072
genomic: TGAAGATATTTCTCTGGACTATCGATGAATTGCCTTCAGAATCTTCCCAGgttagactct ... ttgatttcagATCCTCCGCTTTGCCTTTGCAAAGCTTCAATTGCCACGGAAGAAAGGCTAT
EST: TGCAGATATTTCTCTGGACTATCGATGAATTGCCTTCAGAATCTTCCCAG ATCCTCCGCTTTGCCTTTGCAAAGCTTCAATTGCCACGGAAGAAAGGCTATEST: gi|110731715|gb|EE106367.1|EE106367
genomic: TGAAGATATTTCTCTGGACTATCGATGAATTGCCTTCAGAATCTTCCCAGgttagactct ... ttgatttcagATCCTCCGCTTTGCCTTTGCAAAGCTTCAATTGCCACGGAAGAAAGGCTAT
EST: TGAAGATATTTCTCTGGACTATCGATGAATTGCCTTCAGAATCTTCCCAG ATCCTCCGCTTTGCCTTTGCAAAGCTTCAATTGCCACGGAAGAAAGGCTATEST: gi|110725728|gb|EE102561.1|EE102561
genomic: TGAAGATATTTCTCTGGACTATCGATGAATTGCCTTCAGAATCTTCCCAGgttagactct ... ttgatttcagATCCTCCGCTTTGCCTTTGCAAAGCTTCAATTGCCACGGAAGAAAGGCTAT
EST: TGAAGATATTTCTCTGGACTATCGATGAATTGCCTTCAGAATCTTCCCAG ATCCTCCGCTTTGCCTTTGCAAAGCTTCAATTGCCACGGAAGAAAGGCTATEST: gi|110719002|gb|EE096483.1|EE096483
genomic: TGAAGATATTTCTCTGGACTATCGATGAATTGCCTTCAGAATCTTCCCAGgttagactct ... ttgatttcagATCCTCCGCTTTGCCTTTGCAAAGCTTCAATTGCCACGGAAGAAAGGCTAT
EST: TGCAGATATTTCTCTGGACTATCGATGAATTGCCTTCAGAATCTTCCCAG CTCCTCCGCTTTGCCTTTGCAAAGCTTCAATTGCCACGGAAGAAAGGCTATEST: gi|71858350|gb|DT007405.1|DT007405
genomic: TGAAGATATTTCTCTGGACTATCGATGAATTGCCTTCAGAATCTTCCCAGgttagactct ... ttgatttcagATCCTCCGCTTTGCCTTTGCAAAGCTTCAATTGCCACGGAAGAAAGGCTAT
EST: TGCAGATATTTCTCTGGACTATCGATGAATTGCCTTCAGAATCTTCCCAG ATCCTCCGCTTTGCCTTTGCAAAGCTTCAATTGCCACGGAAGAAAGGCTATEST: gi|110723499|gb|EE100881.1|EE100881
genomic: TGAAGATATTTCTCTGGACTATCGATGAATTGCCTTCAGAATCTTCCCAGgttagactct ... ttgatttcagATCCTCCGCTTTGCCTTTGCAAAGCTTCAATTGCCACGGAAGAAAGGCTAT
EST: CTGGACTATCGATGAATTGCCTTCAGAATCTTCCCAG ATCCTCCGCTTTGCCTTTGCAAAGCTTCAATTGCCACGGAAGAAAGGCTAT
genomic: CTGGACTATCGATGAATTGCCTTCAGAATCTTCCCAGgttagactct ... ttgatttcagATCCTCCGCTTTGCCTTTGCAAAGCTTCAATTGCCACGGAAGAAAGGCTAT
gttgcgtcgatctcattactacgtttctgaagatatatatttgctttgatttcagATCCTCCGCTTTGCCTTTGCAAAGCTTCAATTGCCACGGAAGAAAGGCTATTTGCTCTGTTCACAATCTG
ctttgat putative branch site (score: 5)
tttgcttt CT-rich tract
tgaagatatatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagactctttttttcttctgaatttagattctgtgttgcgtcgatctcattactacgtttctgaagatatatatttgctttgatttcagATCCTCCGCTTTGCCTTTGCAAAGCTTCAATTGCCACGGAAGAAAGGCTATTTGCTCTGTTCACAATCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA