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gtaagtaattcgtttttaaaacttcatgtgcgttatcaaacttggactccgttttgcagTAAAAGATCCACCAGATTTTATCTATTTACTTGATAACTGTCCTCACGACTGGCTTTTTCCACAATGCGCTGGAGTG
species | Selaginella moellendorffii |
transcript | EFJ09619 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AACTGGCCAACGCGGCATAATCTCCAGGGGTTGGGGAGGCCTGGGTGACA TANAAGATCCACCAGATTTTATCTATTTACTTGATAACTGTCCTCACGACTEST: gi|169035949|gb|FE442417.1|FE442417
genomic: AACTGGCCAACGCGGCATAATCTCCAGGGGTTGGGGAGGCCTGGGTGACAgtaagtaatt ... cgttttgcagTAAAAGATCCACCAGATTTTATCTATTTACTTGATAACTGTCCTCACGACT
EST: AACTGGCCAACGCGGCATAATCTCCAGGGGTTGGGGAGGCCTGGGTGACA TAAAAGATCCACCAGATTTTATCTATTTACTTGATAACTGTCCTCACGACTEST: gi|169113522|gb|FE515057.1|FE515057
genomic: AACTGGCCAACGCGGCATAATCTCCAGGGGTTGGGGAGGCCTGGGTGACAgtaagtaatt ... cgttttgcagTAAAAGATCCACCAGATTTTATCTATTTACTTGATAACTGTCCTCACGACT
EST: AACTGGCCAACGCGGCATAATCTCCAGGGGTTGGGGAGGCCTGGGTGACA TAAAAGATCCACCAGATTTTATCTATTTACTTGATAACTGTCCTCACGACTEST: gi|169052850|gb|FE461215.1|FE461215
genomic: AACTGGCCAACGCGGCATAATCTCCAGGGGTTGGGGAGGCCTGGGTGACAgtaagtaatt ... cgttttgcagTAAAAGATCCACCAGATTTTATCTATTTACTTGATAACTGTCCTCACGACT
EST: AACTGGCCAACGCGGCATAATCTCCAGGGGTTGGGGAGGCCTGGGTGACA TAAAAGATCCACCAGATTTTATCTATTTACTTGATAACTGTCCTCACGACTEST: gi|169094267|gb|FE495545.1|FE495545
genomic: AACTGGCCAACGCGGCATAATCTCCAGGGGTTGGGGAGGCCTGGGTGACAgtaagtaatt ... cgttttgcagTAAAAGATCCACCAGATTTTATCTATTTACTTGATAACTGTCCTCACGACT
EST: AACTGGCCAACGCGGCATAATCTCCAGGGGTTGGGGAGGGCTGGGTGACA TAAAAGATCCACCAGATTTTATCTATTTACTGGATAACTGTCCTCACGACTEST: gi|169043154|gb|FE454068.1|FE454068
genomic: AACTGGCCAACGCGGCATAATCTCCAGGGGTTGGGGAGGCCTGGGTGACAgtaagtaatt ... cgttttgcagTAAAAGATCCACCAGATTTTATCTATTTACTTGATAACTGTCCTCACGACT
EST: AACTGGCCAACGCGGCATAATCTCCAGGGGTTGGGGAGGGCTGGGTGACA TAAAAGATCCACCAGATTTTATCTATTTACTGGATAACTGTCCTCACGACT
genomic: AACTGGCCAACGCGGCATAATCTCCAGGGGTTGGGGAGGCCTGGGTGACAgtaagtaatt ... cgttttgcagTAAAAGATCCACCAGATTTTATCTATTTACTTGATAACTGTCCTCACGACT
gtaattcgtttttaaaacttcatgtgcgttatcaaacttggactccgttttgcagTAAAAGATCCACCAGATTTTATCTATTTACTTGATAACTGTCCTCACGACTGGCTTTTTCCACAATGCGCTGGAGTG
ctccgtttt CT-rich tract
tttttaaaacttcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtaattcgtttttaaaacttcatgtgcgttatcaaacttggactccgttttgcagTAAAAGATCCACCAGATTTTATCTATTTACTTGATAACTGTCCTCACGACTGGCTTTTTCCACAATGCGCTGGAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA