1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtactagacaagtttgtgatggtatagctaacttggtacttatatcttttcatatcttttccagGTATCGAATCACTGAAGGGATCAACCTTCCCTTTCGAGTTTTTCCCAGCATCAAAGAACTTGGTCGCACGCGTATGGAAGTGAATGTGAAG
species | Selaginella moellendorffii |
transcript | EFJ25669 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GAGAAGACGGTCAGCTTTGTTCCCCCGGATGGAGAATTCGAGCTGATGAA GTATCGAATCACTGAAGGGATCAACCTTCCCTTTCGAGTTTTTCCCAGCATEST: gi|169073216|gb|FE481045.1|FE481045
genomic: GAGAAGACGGTCAGCTTTGTTCCTCCGGATGGAGAATTCGAGCTGATGAAgtactagaca ... tcttttccagGTATCGAATCACTGAAGGGATCAACCTTCCCTTTCGAGTTTTTCCCAGCAT
EST: GAGAAGACGGTCAGCTTTGTTCCTCCGGATGGAGAATTCGAGCTGATGAA GTACTAGACAAGTATCGAATCACTGAAGGGATCAACCTTCCCTTTCGAGTTEST: gi|169050964|gb|FE458134.1|FE458134
genomic: GAGAAGACGGTCAGCTTTGTTCCTCCGGATGGAGAATTCGAGCTGATGAAgtactagaca ... tcttttccagGTA-T---C--G-A---A-TCACTGAAGGGATCAACCTTCCCTTTCGAGTT
EST: GAGAAGACGGTCAGCTTTGTTCCCCCGGATGGAGAATTCGAGCTGATGAA GTATCGAATCACTGAAGGGATCAACCTTCCCTTTCGAGTTTTTCCCAGCATEST: gi|169109082|gb|FE511284.1|FE511284
genomic: GAGAAGACGGTCAGCTTTGTTCCTCCGGATGGAGAATTCGAGCTGATGAAgtactagaca ... tcttttccagGTATCGAATCACTGAAGGGATCAACCTTCCCTTTCGAGTTTTTCCCAGCAT
EST: GAGAAGACGGTCAGCTTTGTTCCTCCGGATGGAGAATTCGAGCTGATGAA GTATCGAATCACTGAAGGGATCAACCTTCCCTTTCGAGTTTTTCCCAGCATEST: gi|169066974|gb|FE475964.1|FE475964
genomic: GAGAAGACGGTCAGCTTTGTTCCTCCGGATGGAGAATTCGAGCTGATGAAgtactagaca ... tcttttccagGTATCGAATCACTGAAGGGATCAACCTTCCCTTTCGAGTTTTTCCCAGCAT
EST: GAGAAGACGGTCAGCTTTGTTCCTCCGGATGGAGAATTCGAGCTGATGAA GTATCGAATCACTGAAGGGATCAACCTTCCCTTTCGAGTTTTTCCCAGCAT
genomic: GAGAAGACGGTCAGCTTTGTTCCTCCGGATGGAGAATTCGAGCTGATGAAgtactagaca ... tcttttccagGTATCGAATCACTGAAGGGATCAACCTTCCCTTTCGAGTTTTTCCCAGCAT
aagtttgtgatggtatagctaacttggtacttatatcttttcatatcttttccagGTATCGAATCACTGAAGGGATCAACCTTCCCTTTCGAGTTTTTCCCAGCATCAAAGAACTTGGTCGCACGCGTATGGAAGTGAATGTGAAG
agctaac putative branch site (score: 19)
tcttttcatatctttt putative PPT
ttatatcttttcatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactagacaagtttgtgatggtatagctaacttggtacttatatcttttcatatcttttccagGTATCGAATCACTGAAGGGATCAACCTTCCCTTTCGAGTTTTTCCCAGCATCAAAGAACTTGGTCGCACGCGTATGGAAGTGAATGTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG