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gtgaggctgctatttttattcctgcagatgttcagatgagtaaaagCAGGCGGGTATTTCATTTCGGCCAATTGAGACAGTTGCACGTCCTGGCCCCATACATACCAGTTGTCAATCCGCAGCTTCGCGATACTGTATATGAG
species | Selaginella moellendorffii |
transcript | EFJ24868 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GCTTCTTTATGTCCAAAGATCTTGCGTGGTAGTGTTGAGGCTTGGGAAAG --G-CGGGTATTTCATTTCGGCCAATTGAGACAGTTGCACGTCCTGGCCCCEST: gi|169097542|gb|FE497984.1|FE497984
genomic: GCTTCTTTATGTCCAAAGATCTTGCGTGGTAGTGTTGAGGCTTGGGAAAGgtgaggctgc ... tgagtaaaagCAGGCGGGTATTTCATTTCGGCCAATTGAGACAGTTGCACGTCCTGGCCCC
EST: GCTTCTTTATGTCCAAAGATCTTGCGTGGTAGTGTTGAGGCTTGGG-AA- -AGGCGGGTATTTCATTTCGGCCAATTGAGACAGTTGCACGTCCTGGCCCCEST: gi|169114156|gb|FE516835.1|FE516835
genomic: GCTTCTTTATGTCCAAAGATCTTGCGTGGTAGTGTTGAGGCTTGGGAAAGgtgaggctgc ... tgagtaaaagCAGGCGGGTATTTCATTTCGGCCAATTGAGACAGTTGCACGTCCTGGCCCC
EST: GCTTCTTTATGTCCAAAGATCTTGCGTGGTAGTGTTGAGGCTTGGG-AA- -AGGCGGGTATTTCATTTCGGCCAATTGAGACAGTTGCACGTCCTGGCCCCEST: gi|169020470|gb|FE431717.1|FE431717
genomic: GCTTCTTTATGTCCAAAGATCTTGCGTGGTAGTGTTGAGGCTTGGGAAAGgtgaggctgc ... tgagtaaaagCAGGCGGGTATTTCATTTCGGCCAATTGAGACAGTTGCACGTCCTGGCCCC
EST: GCTTCTTTATGTCCAAAGATCTTGCGTGGTAGTGTTGAGGCTTGGG-AA- -AGGCGGGTATTTCATTTCGGCCAATTGAGACAGTTGCACGTCCTGGCCCCEST: gi|169097119|gb|FE500083.1|FE500083
genomic: GCTTCTTTATGTCCAAAGATCTTGCGTGGTAGTGTTGAGGCTTGGGAAAGgtgaggctgc ... tgagtaaaagCAGGCGGGTATTTCATTTCGGCCAATTGAGACAGTTGCACGTCCTGGCCCC
EST: GCTTCTTTATGTCCAAAGATCTTGCGTGGTAGTGTTGAGGCTTGGG-AA- -AGGCGGGTATTTCATTTCGGCCAATTGAGACAGTTGCACGTCCTGGCCCC
genomic: GCTTCTTTATGTCCAAAGATCTTGCGTGGTAGTGTTGAGGCTTGGGAAAGgtgaggctgc ... tgagtaaaagCAGGCGGGTATTTCATTTCGGCCAATTGAGACAGTTGCACGTCCTGGCCCC
gtgaggctgctatttttattcctgcagatgttcagatgagtaaaagCAGGCGGGTATTTCATTTCGGCCAATTGAGACAGTTGCACGTCCTGGCCCCATACATACCAGTTGTCAATCCGCAGCTTCGCGATACTGTATATGAG
tatttttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaggctgctatttttattcctgcagatgttcagatgagtaaaagCAGGCGGGTATTTCATTTCGGCCAATTGAGACAGTTGCACGTCCTGGCCCCATACATACCAGTTGTCAATCCGCAGCTTCGCGATACTGTATATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT