1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
gtaggtacgctatggcggatcaacaatgcattacatgtaattccccgtttactttcagGTCGCGCCGATCCTTGTACCCTTATTGAAGTTTTACTTTCATGAAGAAGTTCGAAAAGCCGCTGTTTCAG
species | Selaginella moellendorffii |
transcript | EFJ15568 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GTTGTTATGCGGACGAACTCAAGGAAGGGTTCTTTCCGTGGATCGAGCAG GTCGCGCCGATCCTTGTACCCTTATTGAAGTTTTACTTTCATGAAGAAGTTEST: gi|169099597|gb|FE500550.1|FE500550
genomic: GTTGTTATGCGGACGAACTCAAGGAAGGGTTCTTTCCGTGGATCGAGCAGgtaggtacgc ... ttactttcagGTCGCGCCGATCCTTGTACCCTTATTGAAGTTTTACTTTCATGAAGAAGTT
EST: GTTGTTATGCGGACGAACTCAAGGAAGGGTTCTTTCCGTGGATCGAGCAG GTCGCGCCGATCCTTGTACCCTTATTGAAGTTTTACTTTCATGAAGAAGTTEST: gi|169076580|gb|FE484687.1|FE484687
genomic: GTTGTTATGCGGACGAACTCAAGGAAGGGTTCTTTCCGTGGATCGAGCAGgtaggtacgc ... ttactttcagGTCGCGCCGATCCTTGTACCCTTATTGAAGTTTTACTTTCATGAAGAAGTT
EST: GTTGTTATGCGGACGAACTCAAGGAAGGGTTCTTTCCGTGGATCGAGCAG GTCGCGCCGATCCTTGTACCCTTATTGAAGTTTTACTTTCATGAAGAAGTTEST: gi|169048415|gb|FE456324.1|FE456324
genomic: GTTGTTATGCGGACGAACTCAAGGAAGGGTTCTTTCCGTGGATCGAGCAGgtaggtacgc ... ttactttcagGTCGCGCCGATCCTTGTACCCTTATTGAAGTTTTACTTTCATGAAGAAGTT
EST: GTTGTTATGCGGACGAACTCAAGGAAGGGTTCTTTCCGTGGATCGAGCAG GTCGCGCCGATCCTTGTACCCTTATTGAAGTTTTACTTTCATGAAGAAGTTEST: gi|169088594|gb|FE491506.1|FE491506
genomic: GTTGTTATGCGGACGAACTCAAGGAAGGGTTCTTTCCGTGGATCGAGCAGgtaggtacgc ... ttactttcagGTCGCGCCGATCCTTGTACCCTTATTGAAGTTTTACTTTCATGAAGAAGTT
EST: GTTGTTATGCGGACGAACTCAAGGAAGGGTTCTTTCCGTGGATCGAGCAG GTCGCGCCGATCCTTGTACCCTTATTGAAGTTTTACTTTCATGAAGAAGTTEST: gi|169062919|gb|FE472396.1|FE472396
genomic: GTTGTTATGCGGACGAACTCAAGGAAGGGTTCTTTCCGTGGATCGAGCAGgtaggtacgc ... ttactttcagGTCGCGCCGATCCTTGTACCCTTATTGAAGTTTTACTTTCATGAAGAAGTT
EST: GTTGTTATGCGGACGAACTCAAGGAAGGGTTCTTTCCGTGGATCGAGCAG GTCGCGCCGATCCTTGTACCCTTATTGAAGTTTTACTTTCATGAAGAAGTT
genomic: GTTGTTATGCGGACGAACTCAAGGAAGGGTTCTTTCCGTGGATCGAGCAGgtaggtacgc ... ttactttcagGTCGCGCCGATCCTTGTACCCTTATTGAAGTTTTACTTTCATGAAGAAGTT
ggtacgctatggcggatcaacaatgcattacatgtaattccccgtttactttcagGTCGCGCCGATCCTTGTACCCTTATTGAAGTTTTACTTTCATGAAGAAGTTCGAAAAGCCGCTGTTTCAG
ttccccgtttactttc CT-rich tract
atgtaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggtacgctatggcggatcaacaatgcattacatgtaattccccgtttactttcagGTCGCGCCGATCCTTGTACCCTTATTGAAGTTTTACTTTCATGAAGAAGTTCGAAAAGCCGCTGTTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT